From 612127d8814129f504529b0c0bdd5f152fae05da Mon Sep 17 00:00:00 2001
From: Natan Yusupov <natan_yusupov@psych.mpg.de>
Date: Thu, 28 Mar 2024 11:53:24 +0100
Subject: [PATCH] buf fix script 10

---
 scripts/10_correction_batch_effects_unfiltered.Rmd | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scripts/10_correction_batch_effects_unfiltered.Rmd b/scripts/10_correction_batch_effects_unfiltered.Rmd
index 54ec777..297e3bd 100644
--- a/scripts/10_correction_batch_effects_unfiltered.Rmd
+++ b/scripts/10_correction_batch_effects_unfiltered.Rmd
@@ -628,7 +628,7 @@ if (changing_status == "changed") {
   cat("PCA results and M-values in the different correction steps and final batch-corrected dataset were saved to the processed_data folder",
       sep = "<br<\n")
   
-  if (all.equal(colnames(Betas_clean_unfiltered_quantile_bmiq_filtered_combated),rownames(PhenoData_clean))){
+  if (all.equal(colnames(Betas_clean_unfiltered_quantile_bmiq_combated),rownames(PhenoData_clean))){
     cat("The sample names between the unfiltered-normalized-corrected Beta dataset and the phenotype data were identical", 
         "ExpressionSet for unfiltered data was created and saved to the processed data folder", sep = "<br>\n")
   } else {