diff --git a/scripts/7_normalization.Rmd b/scripts/7_normalization.Rmd index 52297e2..583c20b 100644 --- a/scripts/7_normalization.Rmd +++ b/scripts/7_normalization.Rmd @@ -99,6 +99,7 @@ save(Betas_clean_filtered_quantile_bmiq, file = paste0(user_choices$project_name ```{r normalize unfiltered probes, include=FALSE} # Normalization of unfiltered data +# Functional normalization gRatioSet_clean_unfiltered_quantile <- preprocessQuantile(RGSet_clean) save(gRatioSet_clean_unfiltered_quantile, file = paste0(user_choices$project_name, "/processed_data/gRatioSet_clean_unfiltered_quantile.Rdata")) # output: GenomicRatioSet