diff --git a/scripts/6_filtering_cpgs.Rmd b/scripts/6_filtering_cpgs.Rmd
index 14b0004..e0870b2 100644
--- a/scripts/6_filtering_cpgs.Rmd
+++ b/scripts/6_filtering_cpgs.Rmd
@@ -436,7 +436,8 @@ save(Ms_clean_filtered, file = paste0(user_choices$project_name, "/processed_dat
 
 ```{r, save annotations, include=FALSE}
 # unfiltered
-save(annotations_clean, file = paste0(user_choices$project_name, "/reports/annotations_clean.Rdata"))
+annotations_clean_unfiltered <- annotations_clean
+save(annotations_clean_unfiltered, file = paste0(user_choices$project_name, "/reports/annotations_clean_unfiltered.Rdata"))
 # filtered
 annotations_clean_filtered <- getAnnotation(gRatioSet_clean_filtered)
 save(annotations_clean_filtered, file = paste0(user_choices$project_name, "/reports/annotations_clean_filtered.Rdata"))