diff --git a/pipeline_flowchart/pipeline_flowchart.Rmd b/pipeline_flowchart/pipeline_flowchart.Rmd index f9ac270..26d077a 100644 --- a/pipeline_flowchart/pipeline_flowchart.Rmd +++ b/pipeline_flowchart/pipeline_flowchart.Rmd @@ -19,16 +19,16 @@ data <- tibble::tibble(from = c("Define Data Properties & Locations, "Quality Control (Script 3)", "Check Matching Epigenetic Sex (Script 4)", "Samples Exclusion (Script 5)", - "Normalization (Script 6)", - "Filtering CpGs (Script 7)", + "Filtering CpGs (Script 6)", + "Normalization (Script 7)", "Removal of Outliers & Detection of Batch Effects (Script 8)", "Correction of Technical Batch Effects - Filtered Data (Script 9)"), to = c("Import Raw DNAm (Script 2)", "Quality Control (Script 3)", "Check Matching Epigenetic Sex (Script 4)", "Samples Exclusion (Script 5)", - "Normalization (Script 6)", - "Filtering CpGs (Script 7)", + "Filtering CpGs (Script 6)", + "Normalization (Script 7)", "Removal of Outliers & Detection of Batch Effects (Script 8)", "Correction of Technical Batch Effects - Filtered Data (Script 9)", "Correction of Technical Batch Effects - Unfiltered Data (Script 10)")) diff --git a/pipeline_flowchart/pipeline_flowchart.pdf b/pipeline_flowchart/pipeline_flowchart.pdf index 388145d..ce10fed 100644 Binary files a/pipeline_flowchart/pipeline_flowchart.pdf and b/pipeline_flowchart/pipeline_flowchart.pdf differ diff --git a/scripts/7_filtering_cpgs.Rmd b/scripts/6_filtering_cpgs.Rmd similarity index 100% rename from scripts/7_filtering_cpgs.Rmd rename to scripts/6_filtering_cpgs.Rmd diff --git a/scripts/6_normalization.Rmd b/scripts/7_normalization.Rmd similarity index 100% rename from scripts/6_normalization.Rmd rename to scripts/7_normalization.Rmd