From d1c9c4b430c3bfe9b9ed4103d9349796e3c40704 Mon Sep 17 00:00:00 2001
From: Natan Yusupov <natan_yusupov@psych.mpg.de>
Date: Fri, 15 Mar 2024 12:54:41 +0100
Subject: [PATCH] change order of script 6 & 7

---
 pipeline_flowchart/pipeline_flowchart.Rmd     |   8 ++++----
 pipeline_flowchart/pipeline_flowchart.pdf     | Bin 46939 -> 46939 bytes
 ...iltering_cpgs.Rmd => 6_filtering_cpgs.Rmd} |   0
 ..._normalization.Rmd => 7_normalization.Rmd} |   0
 4 files changed, 4 insertions(+), 4 deletions(-)
 rename scripts/{7_filtering_cpgs.Rmd => 6_filtering_cpgs.Rmd} (100%)
 rename scripts/{6_normalization.Rmd => 7_normalization.Rmd} (100%)

diff --git a/pipeline_flowchart/pipeline_flowchart.Rmd b/pipeline_flowchart/pipeline_flowchart.Rmd
index f9ac270..26d077a 100644
--- a/pipeline_flowchart/pipeline_flowchart.Rmd
+++ b/pipeline_flowchart/pipeline_flowchart.Rmd
@@ -19,16 +19,16 @@ data <- tibble::tibble(from = c("Define Data Properties & Locations,
                                 "Quality Control (Script 3)",
                                 "Check Matching Epigenetic Sex (Script 4)",
                                 "Samples Exclusion (Script 5)",
-                                "Normalization (Script 6)",
-                                "Filtering CpGs (Script 7)",
+                                "Filtering CpGs (Script 6)",
+                                "Normalization (Script 7)",
                                 "Removal of Outliers & Detection of Batch Effects (Script 8)",
                                 "Correction of Technical Batch Effects - Filtered Data (Script 9)"),
                        to = c("Import Raw DNAm (Script 2)",
                               "Quality Control (Script 3)",
                                 "Check Matching Epigenetic Sex (Script 4)",
                                 "Samples Exclusion (Script 5)",
-                                "Normalization (Script 6)",
-                                "Filtering CpGs (Script 7)",
+                                "Filtering CpGs (Script 6)",
+                                "Normalization (Script 7)",
                                 "Removal of Outliers & Detection of Batch Effects (Script 8)",
                                 "Correction of Technical Batch Effects - Filtered Data (Script 9)",
                                 "Correction of Technical Batch Effects - Unfiltered Data (Script 10)"))
diff --git a/pipeline_flowchart/pipeline_flowchart.pdf b/pipeline_flowchart/pipeline_flowchart.pdf
index 388145d5a4a7ec6aaffc8f45b76175ea7821c6e6..ce10fed6a7c90085f835cfc28aa3f25dfc54dd18 100644
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diff --git a/scripts/7_filtering_cpgs.Rmd b/scripts/6_filtering_cpgs.Rmd
similarity index 100%
rename from scripts/7_filtering_cpgs.Rmd
rename to scripts/6_filtering_cpgs.Rmd
diff --git a/scripts/6_normalization.Rmd b/scripts/7_normalization.Rmd
similarity index 100%
rename from scripts/6_normalization.Rmd
rename to scripts/7_normalization.Rmd