README_BIDS_repair_1_0_2.txt

BIDS conversion

M. Czisch
29.5.2018 

BecomeVersion: 1.0.2

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*  PURPOSE:  *
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In BecomeVersion 1.0.1, the physio files for respiration (RESP) and 
photoplethysmography (PPG) created by the GE scanner were not copied 
to the physio subfolder.

The script repair_BIDS_1_0_2.m does this copy.


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*    CALL :  *
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repair_BIDS_1_0_2(directory_name)

e.g. repair_BIDS_1_0_2('/run/media/spectro/DATAPART1/FORSCHUNGSAMBULANZ/Archiv_Garching/FOK/FOK0075')

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*    OUTPUT :  *
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RESP and PPG files are copied to the subfolder ????_BIDS/physio

e.g.
/run/media/spectro/DATAPART1/FORSCHUNGSAMBULANZ/Archiv_Garching/FOK/FOK0075/FOK0075_BIDS

sub-FOK0075_task-rest_run-1_ppg.txt
sub-FOK0075_task-tet_ppg.txt
sub-FOK0075_task-reward_ppg.txt
sub-FOK0075_task-nback_ppg.txt

sub-FOK0075_task-rest_run-1_resp.txt
sub-FOK0075_task-tet_resp.txt
sub-FOK0075_task-reward_resp.txt
sub-FOK0075_task-nback_resp.txt


the script also creates a logfile:  logfile_FOK0075_ppg_resp_conversion.txt
detailing the date and copy steps

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*   SUBROUTINES:   *
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all versions 1.0.1, if not otherwise indicated
check_BIOMAX
read_GE_BIDS
repair_PPG_BIDS


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* REQUIREMENTS  *
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The script expects that the data have already been transformed to BIDS format 


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*  DESCRIPTION  *
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