config.py

"""
Configuration of the website and database.

Copy this file to config.py and change the settings accordingly
"""
import os
import tempfile
basedir = os.path.abspath(os.path.dirname(__file__))

# Flask settings, make sure to set the SECRET_KEY and turn DEBUG and TESTING to False for production
DEBUG = False
TESTING = True
WTF_CSRF_ENABLED = False

SECRET_KEY = 'DragonsLiveHere'

# Login settings + admin account
LOGIN_ENABLED = True
ADMIN_PASSWORD = 'admin'
ADMIN_EMAIL = 'admin@web.com'


# Database settings, database location and path to migration scripts
# THIS WILL CREATE A NEW DATABASE AND FILL IT WITH DUMMY DATA
# DO NOT RUN THIS WITH AN EXISTING DATABASE AS IT WILL BE DROPPED !
_, DATABASE_PATH = tempfile.mkstemp()
SQLALCHEMY_DATABASE_URI = 'sqlite:///' + DATABASE_PATH
SQLALCHEMY_MIGRATE_REPO = os.path.join(basedir, 'migration')
SQLALCHEMY_ECHO = DEBUG
SQLALCHEMY_TRACK_MODIFICATIONS = False


# Settings for the FTP/bulk data
PLANET_FTP_DATA = tempfile.mkdtemp()

# Settings for Cache
CACHE_TYPE = 'null'
CACHE_DEFAULT_TIMEOUT = 600
CACHE_THRESHOLD = 10000
CACHE_NO_NULL_WARNING = True

# Whooshee settings
WHOOSHEE_DIR = tempfile.mkdtemp()
WHOOSHEE_MIN_STRING_LEN = 3
WHOOSHEE_WRITER_TIMEOUT = 2
WHOOSHEE_MEMORY_STORAGE = False
WHOOSHEE_ENABLE_INDEXING = True

# Minify pages when debug is off
MINIFY_PAGE = not DEBUG

TMP_DIR = tempfile.mkdtemp()

# BLAST settings
BLAST_ENABLED = False
BLAST_TMP_DIR = tempfile.mkdtemp()

BLASTP_PATH = 'D:/blast/bin/blastp.exe'
BLASTP_DB_PATH = 'D:/blast/db/ath_db'
BLASTN_PATH = 'D:/blast/bin/blastn.exe'
BLASTN_DB_PATH = 'D:/blast/db/ath_cds_db'

BLASTP_CMD = BLASTP_PATH + ' -db ' + BLASTP_DB_PATH + ' -query <IN> -out <OUT> -outfmt 6 -num_threads 1'
BLASTN_CMD = BLASTN_PATH + ' -db ' + BLASTN_DB_PATH + ' -query <IN> -out <OUT> -outfmt 6 -num_threads 1'

# Debug settings
DEBUG_TB_INTERCEPT_REDIRECTS = False

# Twitter Handle
TWITTER_HANDLE = None