diff --git a/docs/tutorials/002_expression_profiles.md b/docs/tutorials/002_expression_profiles.md index a0eac0a..3ba4403 100644 --- a/docs/tutorials/002_expression_profiles.md +++ b/docs/tutorials/002_expression_profiles.md @@ -16,10 +16,28 @@ Furthermore, summarized profiles with fewer conditions are available (link below ![expression profile summary](images/expression_profile_summary.png "Expression profile summary example") -The **download** buttons below expression plots allow you to download the raw data +The **download** buttons below expression plots allow you to download the data from the plot in a tab-delimited text file. + +Expression profiles can be compared between genes from the same species. From the tools menu select **Compare profiles** +in the Expression profiles section. On the next page select the species, enter gene identifiers and select if normalization +should be used (recommended). Click **Show profiles** to get a single plot including multiple genes. + +![expression profile comparison](images/expression_profile_comparison.png "Expression profile comparison example") + ## Heatmaps +While comparing expression profiles is limited to 50 genes, heatmaps can be used to compare larger sets of genes within +one species, or between species. + +The tool to create heatmaps is located in the tools menu, **Create heatmap** in the expression profile section. First +select the correct tab, the default comparison will use all annotated condition but only allows genes from a single species +to be included. The Comparative heatmap allows comparisons between multiple species, but only for a limited set of conditions. + + +![heatmap entry](images/heatmap_entry.png "Heatmap form") + + ## Expression Specificity ## Export *all* expressed genes diff --git a/docs/tutorials/images/expression_profile_comparison.png b/docs/tutorials/images/expression_profile_comparison.png new file mode 100644 index 0000000..abcf742 Binary files /dev/null and b/docs/tutorials/images/expression_profile_comparison.png differ diff --git a/docs/tutorials/images/heatmap_entry.png b/docs/tutorials/images/heatmap_entry.png new file mode 100644 index 0000000..baec272 Binary files /dev/null and b/docs/tutorials/images/heatmap_entry.png differ