added package + further name changes

docs/acknowledgements.md

@@ -1,4 +1,4 @@
-# PlaNet 2.0 Acknowledgements
+# CoNekT Acknowledgements
 
   * [Flask](http://flask.pocoo.org/) and various packages
   * [Python 3.4.3](https://www.python.org/)
@@ -16,6 +16,7 @@
   * [table2CSV.js](http://www.kunalbabre.com/projects/table2CSV.php)
   * [D3.js](https://d3js.org/) 
   * [d3.phylogram.js](https://gist.github.com/kueda/1036776)
+  * [PhyD3.js](https://phyd3.bits.vib.be/)
   * [typeahead.js](https://twitter.github.io/typeahead.js/)
   * [jscolors](http://jscolor.com/)
   * [jQuery File Uploader](https://github.com/danielm/uploader)

docs/apache_wsgi.md

@@ -4,25 +4,25 @@ Install apache and mod_wsgi for python 3
 
     sudo apt-get install apache2  libapache2-mod-wsgi-py3
 
-Copy `planet.template.wsgi` to planet.wsgi and add the correct paths. 
+Copy `conekt.template.wsgi` to conekt.wsgi and add the correct paths. 
 
     WSGI_PATH = 'location of your app'
     WSGI_ENV = 'location of activate_this.py, in the bin folder of the virtual environment'
 
-Configure apache, example below can be added to the default VirtualHost. A valid user (non-admin) is required for this:
+Configure apache, example below can be added to the default VirtualHost. A valid user (non-admin), usually www-data, is required for this:
 
     # This part is optional, but will improve speed
-    Alias /planet/static /path/to/planet/planet/static
+    Alias /planet/static /path/to/conekt/conekt/static
 
-    <Directory /path/to/planet/planet/static>
+    <Directory /path/to/conekt/conekt/static>
         Require all granted
     </Directory>
 
 	# Set up WSGI
 	WSGIDaemonProcess application user=user group=user threads=5
-	WSGIScriptAlias /planet /path/to/planet.wsgi
+	WSGIScriptAlias /planet /path/to/conekt.wsgi
 
-	<Location /planet>
+	<Location /conekt>
     	WSGIProcessGroup application
 	    WSGIApplicationGroup %{GLOBAL}
 	    Require all granted