From c8c7596e5066fc7fc5b2a0484e045575b9c4f97e Mon Sep 17 00:00:00 2001 From: sepro Date: Thu, 27 Oct 2016 10:55:14 +0200 Subject: [PATCH] finished sequence page --- planet/static/css/main.css | 26 ++++++++--- planet/templates/modals/sequence.html | 4 +- planet/templates/sequence.html | 65 +++++++++------------------ 3 files changed, 43 insertions(+), 52 deletions(-) diff --git a/planet/static/css/main.css b/planet/static/css/main.css index 6ac3028..a1ab4a2 100644 --- a/planet/static/css/main.css +++ b/planet/static/css/main.css @@ -72,6 +72,9 @@ textarea.form-control { margin-top: 5px; } +/* + Cytoscape +*/ #cy { min-height: 800px; @@ -88,6 +91,12 @@ textarea.form-control { top: 1em; } +#legend { + display:none; + margin-top:800px; +} + + .panel-scroll { height:250px; max-height: 250px; width: 100%; margin: 0; overflow-y: auto; } /* @@ -302,11 +311,18 @@ submenu border-radius: 6px 0 6px 6px; } -#legend { - display:none; - margin-top:800px; -} - +/* Breadcrumb */ .breadcrumb { margin-top:15px +} + +/* Headers */ + +.banner-blue { + color: white; + padding: 8px 15px; + margin-bottom: 15px; + list-style: none; + background-color: #428bca; + border-radius: 4px; } \ No newline at end of file diff --git a/planet/templates/modals/sequence.html b/planet/templates/modals/sequence.html index 43cb3ea..9166a97 100644 --- a/planet/templates/modals/sequence.html +++ b/planet/templates/modals/sequence.html @@ -1,8 +1,8 @@
{% if coding %} - + {% else %} - + {% endif %}
diff --git a/planet/templates/sequence.html b/planet/templates/sequence.html index 523942c..171cf25 100644 --- a/planet/templates/sequence.html +++ b/planet/templates/sequence.html @@ -8,13 +8,16 @@ {% if sequence %}
  1. Home
    2. +
  2. Species
  3. {{ sequence.species.name }}
  4. Sequence
  5. {{ sequence.name }}

{{ sequence.name }} ({{ sequence.readable_type }})


- + {%- if sequence.aliases -%} +

Aliases : {{sequence.aliases}}

+ {%endif%} {% if sequence.description %}

Description: {{sequence.description}}

@@ -27,16 +30,21 @@

{{ sequence.name }} ({{ sequence.readable_type }})
-

Sequence: coding (download) {%- if sequence.type == 'protein_coding' -%}, protein (download) {% endif %}

+

Gene families: {%- if families|count > 0 -%}{%- for family in families -%} + {{ family.name }} ({{ family.method.method }}) {%- if not loop.last -%}, {% endif %} + {% endfor %} {% else %}No families found for this sequence{% endif %}

+

Sequence: coding (download) {%- if sequence.type == 'protein_coding' -%}, protein (download) {% endif %}

{% if expression_profiles|count > 0 %} + {% for profile in expression_profiles %} {% if loop.first %} -

Expression Profile (view details)

+
+

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

{% endif %} {% endfor %} {% if expression_profiles|count > 1 %} @@ -61,12 +69,11 @@

Expression Profile (No expression profile available

{% endif %}
-

Co-expression Networks

+ {% if network_nodes|count > 0 or coexpression_clusters|count > 0 %}
@@ -100,7 +107,7 @@

Co-expression Networks

{% endif %}
-

Expression Context Conservation (ECC)

+
@@ -129,7 +136,7 @@

Expression Context Conservation (Functional Annotation

    @@ -137,7 +144,7 @@

    Functional Annotation

  • InterPro
-
+
{% if go_associations|count > 0 %} @@ -166,7 +173,9 @@

Functional Annotation

- Toggle parental +
+ Toggle parental +
{% else %}

No GO annotation available for this sequence

{% endif %} @@ -212,41 +221,8 @@

Functional Annotation

 - -
-
-
Gene Families
- {% if families|count > 0 %} -
-
- - - - - - - - - {% for family in families %} - - - - - {% endfor %} - -
NameMethod
{{ family.name }}{{ family.method.method }}
-
-
- {% else %} -
-

This sequence isn't a member of any gene families

-
- {% endif %} -
-
- - -
+
+
External Links
{% if sequence.xrefs|count > 0 %} @@ -304,7 +280,6 @@

Functional Annotation

$(function () { $("#go_table").stupidtable(); $("#interpro_table").stupidtable(); - $("#family_table").stupidtable(); $("#ecc_hits_table").stupidtable(); $("#coexpression_table").stupidtable();