From df3cc7f0c8610b7c27041dee0a445d3606bd446f Mon Sep 17 00:00:00 2001 From: sepro Date: Mon, 22 May 2017 10:36:08 +0200 Subject: [PATCH] cleaned up readme --- README.md | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 001de2f..3b8cbbf 100644 --- a/README.md +++ b/README.md @@ -41,16 +41,16 @@ Next, a fasta-file (with protein sequences) should be basted against the newly c element proteins. detector blast species_peptides.fasta known_te_db species_blast_output - - This command will blast a protein fasta-file species_peptides.fasta against known_te_db (created in the previous step). - The output will be stored in species_blast_output + +This command will blast a protein fasta-file species_peptides.fasta against known_te_db (created in the previous step). +The output will be stored in species_blast_output - Finally, from the output, sequences similar to known transposable element proteins can be extracted using the analyze - command below. +Finally, from the output, sequences similar to known transposable element proteins can be extracted using the analyze +command below. - detector analyze species_blast_output species_putative_te.lst + detector analyze species_blast_output species_putative_te.lst - The file species_putative_te.lst will be created if putative transposable element proteins are found. +The file species_putative_te.lst will be created if putative transposable element proteins are found. Finally, detector can be used to remove the putative TEs from a fasta file.