From 0569ba3de40cf34004ae8a6213a131802fe67124 Mon Sep 17 00:00:00 2001 From: sepro Date: Tue, 26 Apr 2016 15:05:07 +0200 Subject: [PATCH] Fixing docs --- utils/matrix.py | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/utils/matrix.py b/utils/matrix.py index 89b57b4..a66ef27 100644 --- a/utils/matrix.py +++ b/utils/matrix.py @@ -3,6 +3,7 @@ def read_matrix(filename): """ + Reads a matrix and returns a dictionary with the data and list of conditions (tuple of dict and list) :param filename: the matrix containing genes id , conditions and reads :return: data, conditions @@ -28,11 +29,11 @@ def read_matrix(filename): def write_matrix(filename, conditions, data): """ + Writes a matrix to a text file :param filename: the output file - :param conditions: exprerimental conditions + :param conditions: experimental conditions (will be the header) :param data: gene id and reads - :return: matrix """ with open(filename, "w") as f_norm: # print(header) @@ -49,8 +50,7 @@ def write_matrix(filename, conditions, data): def normalize_matrix_counts(data, conditions): """ - - calculates the scoring factor that is needed to claculate TPM + Calculates the scoring factor that is needed to claculate TPM :param data: data form read_matrix :param conditions: conditions form read_matrix @@ -84,7 +84,6 @@ def normalize_matrix_counts(data, conditions): def normalize_matrix_length(data, fasta_file): """ - Needed during calculating TPM and RPKM calculates the read_counts divided by the gene length