From 40c6b98b4cbdc749aebfbe31abcf87f8a6f4a29f Mon Sep 17 00:00:00 2001 From: sepro Date: Thu, 11 May 2017 10:49:35 +0200 Subject: [PATCH] renamed fasta_to_gtf.py to fasta_to_gff.py --- README.md | 4 ++-- helper/{fasta_to_gtf.py => fasta_to_gff.py} | 0 2 files changed, 2 insertions(+), 2 deletions(-) rename helper/{fasta_to_gtf.py => fasta_to_gff.py} (100%) diff --git a/README.md b/README.md index 8455810..4135c52 100644 --- a/README.md +++ b/README.md @@ -87,10 +87,10 @@ Details for each script can be found [here](docs/helper.md) ## Running LSTrAP on transcriptome data To use LSTrAP on a *de novo* assembled transcriptome a little pre-processing is required. Instead of the genome a fasta -file containing **coding** sequences can be used (remove UTRs). Using the helper script fasta_to_gtf.py a gtf file suited +file containing **coding** sequences can be used (remove UTRs). Using the helper script fasta_to_gff.py a gff file suited for LSTrAP can be generated. - python3 fasta_to_gtf.py /path/to/transcript.cds.fasta > output.gtf + python3 fasta_to_gff.py /path/to/transcript.cds.fasta > output.gff ## Adapting LSTrAP to other cluster managers diff --git a/helper/fasta_to_gtf.py b/helper/fasta_to_gff.py similarity index 100% rename from helper/fasta_to_gtf.py rename to helper/fasta_to_gff.py