diff --git a/docs/helper.md b/docs/helper.md index c5a758c..604534c 100644 --- a/docs/helper.md +++ b/docs/helper.md @@ -32,6 +32,16 @@ These scripts will extract the statistics used to assess the quality of samples. Scripts to generate images similar to those presented in the publication. Example data, derived from the *Sorghum bicolor* case study, in included in the repository. +### plot_network + +Script that plots the co-expression neighborhood for a specific gene. A PCC cutoff of 0.7 is included by default, +but users can override this setting using the --cutoff parameter. + + # To draw plot to screen using a PCC cutoff of >= 0.8 + python3 plot_network.py <PCC_TABLE> <GENE_ID> --cutoff 0.8 + + + ### matrix_heatmap.py Script to draw a sample distance heatmap (with hierarchical clustering) based