diff --git a/blast_on_cluster.py b/blast_on_cluster.py index 828fab4..93430ef 100644 --- a/blast_on_cluster.py +++ b/blast_on_cluster.py @@ -61,7 +61,7 @@ def execute_command_on_cluster(submission_script, cmd, threads=1): submission_script] print(qsub_cmd) - # subprocess.call(qsub_cmd) + subprocess.call(qsub_cmd) def run(): @@ -73,10 +73,12 @@ def run(): print("Waiting for command to execute...") - for line in sys.stdin(): + for line in sys.stdin: if check_line(line): print("\n\tCommand found! Executing") execute_command_on_cluster(submission_script, line.strip()) + else: + print(line, end='') if __name__ == "__main__": run()