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multimodalR/NAMESPACE
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| # Generated by roxygen2: do not edit by hand | |
| export(cleanOutput) | |
| export(evaluateAlgorithmOutput) | |
| export(filter0sumGenes) | |
| export(filterForFoldChange) | |
| export(filterForKnownInCancer) | |
| export(filterForMean) | |
| export(filterForXChromosomeGenes) | |
| export(filterForYChromosomeGenes) | |
| export(filterMultimodalGenes) | |
| export(filterRarelyExpressedGenes) | |
| export(getClassifications) | |
| export(getFilteredData) | |
| export(getParam) | |
| export(getParams) | |
| export(getStatistics) | |
| export(isValidUnifiedOutputDataFormat) | |
| export(newParams) | |
| export(plotClassifications) | |
| export(plotExpression) | |
| export(plotOutput) | |
| export(plotStatistics) | |
| export(plotSurvivalCurves) | |
| export(processOneCancerGroup) | |
| export(setParam) | |
| export(setParams) | |
| export(simulateExpression) | |
| export(toCancerDataGroups) | |
| export(updateGeneNames) | |
| export(useDiptest) | |
| export(useFlexmix) | |
| export(useHdbscan) | |
| export(useMclust) | |
| export(useSilvermantest) | |
| exportClasses(Params) | |
| import(flexmix) | |
| import(mclust) | |
| importFrom(KEGGREST,keggGet) | |
| importFrom(LaplacesDemon,rinvgaussian) | |
| importFrom(biomaRt,getBM) | |
| importFrom(biomaRt,useMart) | |
| importFrom(checkmate,assertCharacter) | |
| importFrom(checkmate,assertClass) | |
| importFrom(checkmate,assertList) | |
| importFrom(checkmate,assertString) | |
| importFrom(cowplot,add_sub) | |
| importFrom(cowplot,ggdraw) | |
| importFrom(diptest,dip.test) | |
| importFrom(doParallel,registerDoParallel) | |
| importFrom(dplyr,mutate) | |
| importFrom(dplyr,select) | |
| importFrom(foreach,"%dopar%") | |
| importFrom(foreach,foreach) | |
| importFrom(ggkm,geom_km) | |
| importFrom(ggplot2,aes) | |
| importFrom(ggplot2,coord_fixed) | |
| importFrom(ggplot2,element_text) | |
| importFrom(ggplot2,facet_wrap) | |
| importFrom(ggplot2,geom_bar) | |
| importFrom(ggplot2,geom_density) | |
| importFrom(ggplot2,ggplot) | |
| importFrom(ggplot2,ggtitle) | |
| importFrom(ggplot2,labs) | |
| importFrom(ggplot2,scale_color_discrete) | |
| importFrom(ggplot2,scale_fill_manual) | |
| importFrom(ggplot2,stat_function) | |
| importFrom(ggplot2,theme) | |
| importFrom(ggplot2,theme_bw) | |
| importFrom(ggplot2,xlab) | |
| importFrom(ggplot2,ylab) | |
| importFrom(grDevices,dev.off) | |
| importFrom(grDevices,grey.colors) | |
| importFrom(grDevices,pdf) | |
| importFrom(graphics,hist) | |
| importFrom(graphics,par) | |
| importFrom(magrittr,"%>%") | |
| importFrom(methods,"slot<-") | |
| importFrom(methods,new) | |
| importFrom(methods,rbind2) | |
| importFrom(methods,slot) | |
| importFrom(methods,slotNames) | |
| importFrom(methods,validObject) | |
| importFrom(parallel,clusterEvalQ) | |
| importFrom(parallel,clusterExport) | |
| importFrom(parallel,detectCores) | |
| importFrom(parallel,makeCluster) | |
| importFrom(parallel,parLapply) | |
| importFrom(parallel,stopCluster) | |
| importFrom(plyr,compact) | |
| importFrom(reshape2,melt) | |
| importFrom(reticulate,import) | |
| importFrom(silvermantest,silverman.test) | |
| importFrom(stats,BIC) | |
| importFrom(stats,as.formula) | |
| importFrom(stats,dnorm) | |
| importFrom(stats,pchisq) | |
| importFrom(stats,rgamma) | |
| importFrom(stats,rnorm) | |
| importFrom(stats,runif) | |
| importFrom(stats,sd) | |
| importFrom(stringr,str_replace_all) | |
| importFrom(survival,Surv) | |
| importFrom(survival,survdiff) | |
| importFrom(utils,combn) | |
| importFrom(utils,head) |