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clj-util-datomic-peer/src/test/clojure/de/mpg/shh/util_datomic_peer/transaction_data_test.clj
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(ns de.mpg.shh.util-datomic-peer.transaction-data-test | |
(:require [clojure.tools.logging :refer [info error]] | |
[clojure.string :as str] | |
[clojure.set :as set] | |
[midje.sweet :refer :all] | |
[datomic.api :as dt] | |
[datascript.core :as ds] | |
[data.transaction-data :as transaction-data] | |
[data.transaction-data-extended :as transaction-data-extended] | |
[de.mpg.shh.util-datomic-peer.transaction-data :as peer-transaction-data])) | |
(fact "Create tx-data for run-lane-library data" | |
(let [row->tx (fn [row] | |
(let [read-num (str/split (:file-name row) #"_") | |
read-num (-> row :file-name (str/split #"_") reverse second) | |
;;_ (info "read-num: " read-num) | |
path-kw (if (= read-num "R1") | |
:domain.data.sequencing.illumina.run.lane.library/read-one-file-path | |
:domain.data.sequencing.illumina.run.lane.library/read-two-file-path) | |
sum-kw (if (= read-num "R1") | |
:domain.data.sequencing.illumina.run.lane.library/read-one-sha1sum | |
:domain.data.sequencing.illumina.run.lane.library/read-two-sha1sum)] | |
(clojure.set/rename-keys row {:path path-kw :sha1sum sum-kw}))) | |
rows (vec (map row->tx transaction-data/run-lane-library-data)) | |
push-pattern [:domain.data.sequencing.illumina.run/run-id | |
{:domain.data.sequencing.illumina.run/lane+ [:domain.data.sequencing.illumina.run.lane/lane-id | |
{:domain.data.sequencing.illumina.run.lane/library+ [:domain.data.sequencing.illumina.run.lane.library/library-id | |
:domain.data.sequencing.illumina.run.lane.library/read-one-file-path | |
:domain.data.sequencing.illumina.run.lane.library/read-one-sha1sum | |
:domain.data.sequencing.illumina.run.lane.library/read-two-file-path | |
:domain.data.sequencing.illumina.run.lane.library/read-two-sha1sum | |
:domain.data.sequencing.illumina.run.lane.library/read-count]}]}]] | |
(vec (peer-transaction-data/push->tx-data :db.part/data transaction-data/domain-data-value-type transaction-data/domain-data-datascript-schema push-pattern rows))) => transaction-data/tx-data) | |
(fact "Create tx-data for run-lane-library with generated uuid data" | |
(let [row->tx (fn [row] | |
(let [read-num (str/split (:file-name row) #"_") | |
read-num (-> row :file-name (str/split #"_") reverse second) | |
;;_ (info "read-num: " read-num) | |
path-kw (if (= read-num "R1") | |
:domain.data.sequencing.illumina.run.lane.library/read-one-file-path | |
:domain.data.sequencing.illumina.run.lane.library/read-two-file-path) | |
sum-kw (if (= read-num "R1") | |
:domain.data.sequencing.illumina.run.lane.library/read-one-sha1sum | |
:domain.data.sequencing.illumina.run.lane.library/read-two-sha1sum)] | |
(-> row | |
(clojure.set/rename-keys {:path path-kw :sha1sum sum-kw})))) | |
rows (vec (map row->tx transaction-data-extended/run-lane-library-data)) | |
push-pattern [:domain.data.sequencing.illumina.run/run-id | |
:domain.data.sequencing.illumina.run/uuid | |
{:domain.data.sequencing.illumina.run/lane+ [:domain.data.sequencing.illumina.run.lane/lane-id | |
:domain.data.sequencing.illumina.run.lane/uuid | |
{:domain.data.sequencing.illumina.run.lane/library+ [:domain.data.sequencing.illumina.run.lane.library/library-id | |
:domain.data.sequencing.illumina.run.lane.library/uuid | |
:domain.data.sequencing.illumina.run.lane.library/read-one-file-path | |
:domain.data.sequencing.illumina.run.lane.library/read-one-sha1sum | |
:domain.data.sequencing.illumina.run.lane.library/read-two-file-path | |
:domain.data.sequencing.illumina.run.lane.library/read-two-sha1sum | |
:domain.data.sequencing.illumina.run.lane.library/read-count]}]}]] | |
(vec (remove (comp #(= % "uuid") | |
name | |
#(nth % 2)) (peer-transaction-data/push->tx-data :db.part/data transaction-data-extended/domain-data-value-type transaction-data-extended/domain-data-datascript-schema push-pattern rows)))) => transaction-data-extended/tx-data) | |