From 8825de522733877d3bd573280e8c0b94dde8c414 Mon Sep 17 00:00:00 2001 From: Sarvesh Prakash Nikumbh Date: Mon, 31 Jul 2017 20:34:47 +0200 Subject: [PATCH] minor edits to README --- README.md | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index e3864cf..c0ae565 100644 --- a/README.md +++ b/README.md @@ -22,14 +22,15 @@ sh install.sh ``` ## Usage: -If you have MATLAB: +- If you have MATLAB See the example config file `config-comik.txt`, for an example function call from inside Matlab: For simulated dataset 1 provided in the folder `sample_data/simulated_dataset1` ```Matlab comik_wrapper('config-comik.txt'); ``` -For those who do not have MATLAB, we provide an executable which can be run as follows: +- For those who do not have MATLAB, +We provide an executable which can be run as follows: ``` ./run_CoMIK.sh ./run_CoMIK.sh /usr/lib/matlab-9.0 config-comik.txt @@ -37,7 +38,7 @@ For those who do not have MATLAB, we provide an executable which can be run as f where `/usr/lib/matlab-9.0` is the typical location of the MATLAB runtime on a Linux machine. -_CoMIK_ requires two FASTA files as input -- the first FASTA file containing sequences in the positive class; the second FASTA file containing the sequences in the negative class. Other params are explained below. +_CoMIK_ requires two FASTA files as input -- the first FASTA file containing sequences in the positive class; the second FASTA file containing negative class sequences. Other params are explained below. Values for the following parameters are required to be set: