From 0179c8e994f445036646ec9b606b973f6e4d46e9 Mon Sep 17 00:00:00 2001 From: Rainer Walke Date: Tue, 5 Nov 2019 16:07:23 +0100 Subject: [PATCH] add artificial example data --- DESCRIPTION | 2 +- LICENCE | 712 ---------------------- demo/EX1.R | 6 +- demo/LT1.R | 6 +- demo/RD1.R | 5 +- demo/RE1.R | 5 +- inst/extdata/12411-03-03-4m.csv | 146 +++++ inst/extdata/12613-02-02-4m.csv | 161 +++++ inst/extdata/DEUTNP.Exposures_1x1m.txt | 780 +++++++++++++++++++++++++ inst/extdata/DEUTNP.fltper_1x1m.txt | 780 +++++++++++++++++++++++++ tests/Simple1.R | 22 +- 11 files changed, 1892 insertions(+), 733 deletions(-) delete mode 100644 LICENCE create mode 100644 inst/extdata/12411-03-03-4m.csv create mode 100644 inst/extdata/12613-02-02-4m.csv create mode 100644 inst/extdata/DEUTNP.Exposures_1x1m.txt create mode 100644 inst/extdata/DEUTNP.fltper_1x1m.txt diff --git a/DESCRIPTION b/DESCRIPTION index 52d3b2b..60ffc35 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -17,7 +17,7 @@ Description: This data management package provides some helper Further the classes provide methods to make a subset for selected calendar years or selected regions. The resulting subset objects still contain the original header and footer information. -License: GPL-3 | file LICENCE +License: GPL-3 URL: https://github.molgen.mpg.de/walke/eoR Encoding: UTF-8 Depends: R (>= 3.2.0) diff --git a/LICENCE b/LICENCE deleted file mode 100644 index 74813fa..0000000 --- a/LICENCE +++ /dev/null @@ -1,712 +0,0 @@ -Copyrights -========== - -1. The eoR package itself excluding the example data below. - -Copyright (C) 2019 Rainer Walke - -2. Example data: DEUTNP.Exposures_1x1.txt, DEUTNP.fltper_1x1.txt - -Copyright (C) 2019 Statistische Ämter des Bundes und der Länder, Deutschland and Human Mortality Database. - -Human Mortality Database. University of California, Berkeley (USA), and Max Planck Institute for Demographic Research (Germany). Available at www.mortality.org or www.humanmortality.de (data downloaded on [2019-02-14]). Some data obtained through the Human Mortality Database. - -3. Example data: 12613-02-02-4.csv, 12411-03-03-4.csv - -Copyright (C) 2019 Statistische Ämter des Bundes und der Länder, Deutschland. - -https://www.regionalstatistik.de/genesis/online/ - - -Licences -======== - -1. 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If not, see . - -Also add information on how to contact you by electronic and paper mail. - - If the program does terminal interaction, make it output a short -notice like this when it starts in an interactive mode: - - Copyright (C) - This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. - This is free software, and you are welcome to redistribute it - under certain conditions; type `show c' for details. - -The hypothetical commands `show w' and `show c' should show the appropriate -parts of the General Public License. Of course, your program's commands -might be different; for a GUI interface, you would use an "about box". - - You should also get your employer (if you work as a programmer) or school, -if any, to sign a "copyright disclaimer" for the program, if necessary. -For more information on this, and how to apply and follow the GNU GPL, see -. - - The GNU General Public License does not permit incorporating your program -into proprietary programs. If your program is a subroutine library, you -may consider it more useful to permit linking proprietary applications with -the library. If this is what you want to do, use the GNU Lesser General -Public License instead of this License. But first, please read -. diff --git a/demo/EX1.R b/demo/EX1.R index 129e1da..866fc77 100644 --- a/demo/EX1.R +++ b/demo/EX1.R @@ -5,9 +5,9 @@ require(data.table) require(eoR) # read all information from the file Exposures_1x1 -# example data source: Human Mortality Database https://www.mortality.org/ +# example data similar to data from Human Mortality Database https://www.mortality.org/ # period life tables 1x1 female -infile2 <- file.path(system.file(package="eoR"), "extdata", "DEUTNP.Exposures_1x1.txt") +infile2 <- file.path(system.file(package="eoR"), "extdata", "DEUTNP.Exposures_1x1m.txt") e1 <- readEX1x1(infile2) @@ -27,7 +27,7 @@ region(e1) protocol(e1) # select some years -(e2 <- selectYears(e1, c(1999,2000))) +(e2 <- selectYears(e1, c(2011,2012))) # descriptive tables and a ranges ex1(e2)[, table(Year)] ex1(e2)[, table(Age)] diff --git a/demo/LT1.R b/demo/LT1.R index 5262354..a535556 100644 --- a/demo/LT1.R +++ b/demo/LT1.R @@ -5,9 +5,9 @@ require(data.table) require(eoR) # read all information from the file fltper_1x1 -# example data source: Human Mortality Database https://www.mortality.org/ +# example data similar to data from Human Mortality Database https://www.mortality.org/ # period life tables 1x1 female -infile <- file.path(system.file(package="eoR"), "extdata", "DEUTNP.fltper_1x1.txt") +infile <- file.path(system.file(package="eoR"), "extdata", "DEUTNP.fltper_1x1m.txt") o1 <- readLT1x1(infile) @@ -27,7 +27,7 @@ region(o1) protocol(o1) # select some years -(o2 <- selectYears(o1, c(1999,2000))) +(o2 <- selectYears(o1, c(2011,2012))) # descriptive tables and a ranges lt1(o2)[, table(Year)] lt1(o2)[, table(Age)] diff --git a/demo/RD1.R b/demo/RD1.R index 5410abf..40269b8 100644 --- a/demo/RD1.R +++ b/demo/RD1.R @@ -6,10 +6,11 @@ require(eoR) # read all information from 'GENESIS-Tabelle: 12613-02-02-4' +# example data similar to data from # Statistische Ämter des Bundes und der Länder, Deutschland, 2019 # Gestorbene nach Geschlecht, Nationalität und Altersgruppen - # Jahressumme - regionale Tiefe: Kreise und krfr. Städte -infile3 <- file.path(system.file(package="eoR"), "extdata", "12613-02-02-4.csv") +infile3 <- file.path(system.file(package="eoR"), "extdata", "12613-02-02-4m.csv") d1 <- readRegDeath(infile3) @@ -41,7 +42,7 @@ rd1(d2) rd1total(d2) # select a reagion -(d3 <- selectRegion(d2, "13003")) +(d3 <- selectRegion(d2, "03")) # descriptive tables and a ranges rd1(d3)[, table(Year)] rd1(d3)[, table(Age_Name)] diff --git a/demo/RE1.R b/demo/RE1.R index 4fd707e..87d5fb8 100644 --- a/demo/RE1.R +++ b/demo/RE1.R @@ -5,9 +5,10 @@ require(data.table) require(eoR) # read all information from 'GENESIS-Tabelle: 12411-03-03-4' +# example data similar to data from # Statistische Ämter des Bundes und der Länder, Deutschland, 2019 # Bevölkerung nach Geschlecht, Nationalität und Altersgruppen -infile4 <- file.path(system.file(package="eoR"), "extdata", "12411-03-03-4.csv") +infile4 <- file.path(system.file(package="eoR"), "extdata", "12411-03-03-4m.csv") r1 <- readRegExp(infile4) @@ -40,7 +41,7 @@ re1(r2) re1total(r2) # select a reagion -(r3 <- selectRegion(r2, "13003")) +(r3 <- selectRegion(r2, "03")) # descriptive tables and a ranges re1(r3)[, table(Year)] re1(r3)[, table(Age_Name)] diff --git a/inst/extdata/12411-03-03-4m.csv b/inst/extdata/12411-03-03-4m.csv new file mode 100644 index 0000000..ed79d8a --- /dev/null +++ b/inst/extdata/12411-03-03-4m.csv @@ -0,0 +1,146 @@ +example data similar to 12411-03-03-4.csv +some text +some text +some text +some text +some text +some text +;;;;Insgesamt;männlich;more;more;;;;; +31.12.2011;01;Kreis-1;unter 3 Jahre;11097;5322;5775;10497;4972;5525;600;350;250 +31.12.2011;01;Kreis-1;3 bis unter 6 Jahre;8878;4258;4620;8398;3978;4420;480;280;200 +31.12.2011;01;Kreis-1;6 bis unter 10 Jahre;13317;6387;6930;12597;5967;6630;720;420;300 +31.12.2011;01;Kreis-1;10 bis unter 15 Jahre;13317;6387;6930;12597;5967;6630;720;420;300 +31.12.2011;01;Kreis-1;15 bis unter 18 Jahre;11097;5322;5775;10497;4972;5525;600;350;250 +31.12.2011;01;Kreis-1;18 bis unter 20 Jahre;6658;3193;3465;6298;2983;3315;360;210;150 +31.12.2011;01;Kreis-1;20 bis unter 25 Jahre;24414;11709;12705;23094;10939;12155;1320;770;550 +31.12.2011;01;Kreis-1;25 bis unter 30 Jahre;31072;14902;16170;29393;13923;15470;1679;979;700 +31.12.2011;01;Kreis-1;30 bis unter 35 Jahre;31072;14902;16170;29393;13923;15470;1679;979;700 +31.12.2011;01;Kreis-1;35 bis unter 40 Jahre;37731;18096;19635;35691;16906;18785;2040;1190;850 +31.12.2011;01;Kreis-1;40 bis unter 45 Jahre;35512;17032;18480;33592;15912;17680;1920;1120;800 +31.12.2011;01;Kreis-1;45 bis unter 50 Jahre;31072;14902;16170;29393;13923;15470;1679;979;700 +31.12.2011;01;Kreis-1;50 bis unter 55 Jahre;22195;10645;11550;20995;9945;11050;1200;700;500 +31.12.2011;01;Kreis-1;55 bis unter 60 Jahre;17756;8516;9240;16796;7956;8840;960;560;400 +31.12.2011;01;Kreis-1;60 bis unter 65 Jahre;15535;7450;8085;14696;6961;7735;839;489;350 +31.12.2011;01;Kreis-1;65 bis unter 70 Jahre;13317;6387;6930;12597;5967;6630;720;420;300 +31.12.2011;01;Kreis-1;70 bis unter 75 Jahre;8878;4258;4620;8398;3978;4420;480;280;200 +31.12.2011;01;Kreis-1;75 bis unter 80 Jahre;4439;2129;2310;4199;1989;2210;240;140;100 +31.12.2011;01;Kreis-1;80 bis unter 85 Jahre;2219;1064;1155;2099;994;1105;120;70;50 +31.12.2011;01;Kreis-1;85 bis unter 90 Jahre;1331;638;693;1259;596;663;72;42;30 +31.12.2011;01;Kreis-1;90 Jahre und mehr;887;425;462;839;397;442;48;28;20 +31.12.2011;01;Kreis-1;Insgesamt;341794;163924;177870;323318;153148;170170;18476;10776;7700 +31.12.2016;02;Kreis-2;unter 3 Jahre;16333;7833;8500;15450;7318;8132;883;515;368 +31.12.2016;02;Kreis-2;3 bis unter 6 Jahre;13049;6258;6791;12344;5847;6497;705;411;294 +31.12.2016;02;Kreis-2;6 bis unter 10 Jahre;19619;9409;10210;18559;8791;9768;1060;618;442 +31.12.2016;02;Kreis-2;10 bis unter 15 Jahre;19619;9409;10210;18559;8791;9768;1060;618;442 +31.12.2016;02;Kreis-2;15 bis unter 18 Jahre;16333;7833;8500;15450;7318;8132;883;515;368 +31.12.2016;02;Kreis-2;18 bis unter 20 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+31.12.2016;02;Kreis-2;70 bis unter 75 Jahre;13049;6258;6791;12344;5847;6497;705;411;294 +31.12.2016;02;Kreis-2;75 bis unter 80 Jahre;6523;3128;3395;6171;2923;3248;352;205;147 +31.12.2016;02;Kreis-2;80 bis unter 85 Jahre;3239;1553;1686;3064;1451;1613;175;102;73 +31.12.2016;02;Kreis-2;85 bis unter 90 Jahre;1951;935;1016;1846;874;972;105;61;44 +31.12.2016;02;Kreis-2;90 Jahre und mehr;1285;616;669;1216;576;640;69;40;29 +31.12.2016;02;Kreis-2;Insgesamt;503301;241379;261922;476098;225515;250583;27203;15864;11339 +31.12.2016;03;Kreis-3;unter 3 Jahre;30849;14795;16054;29182;13823;15359;1667;972;695 +31.12.2016;03;Kreis-3;3 bis unter 6 Jahre;24679;11836;12843;23345;11058;12287;1334;778;556 +31.12.2016;03;Kreis-3;6 bis unter 10 Jahre;37019;17754;19265;35018;16587;18431;2001;1167;834 +31.12.2016;03;Kreis-3;10 bis unter 15 Jahre;37019;17754;19265;35018;16587;18431;2001;1167;834 +31.12.2016;03;Kreis-3;15 bis unter 18 Jahre;30849;14795;16054;29182;13823;15359;1667;972;695 +31.12.2016;03;Kreis-3;18 bis unter 20 Jahre;18508;8876;9632;17508;8293;9215;1000;583;417 +31.12.2016;03;Kreis-3;20 bis unter 25 Jahre;67916;32573;35343;64244;30431;33813;3672;2142;1530 +31.12.2016;03;Kreis-3;25 bis unter 30 Jahre;86425;41450;44975;81753;38725;43028;4672;2725;1947 +31.12.2016;03;Kreis-3;30 bis unter 35 Jahre;86425;41450;44975;81753;38725;43028;4672;2725;1947 +31.12.2016;03;Kreis-3;35 bis unter 40 Jahre;104936;50328;54608;99263;47019;52244;5673;3309;2364 +31.12.2016;03;Kreis-3;40 bis unter 45 Jahre;98766;47369;51397;93426;44254;49172;5340;3115;2225 +31.12.2016;03;Kreis-3;45 bis unter 50 Jahre;86425;41450;44975;81753;38725;43028;4672;2725;1947 +31.12.2016;03;Kreis-3;50 bis unter 55 Jahre;61745;29613;32132;58407;27666;30741;3338;1947;1391 +31.12.2016;03;Kreis-3;55 bis unter 60 Jahre;49360;23673;25687;46692;22117;24575;2668;1556;1112 +31.12.2016;03;Kreis-3;60 bis unter 65 Jahre;43190;20714;22476;40855;19352;21503;2335;1362;973 +31.12.2016;03;Kreis-3;65 bis unter 70 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30693 3580 28904 162941 5.31 + 2017 92 0.13703 0.12824 0.50 27114 3478 25375 134037 4.94 + 2017 93 0.15162 0.14093 0.50 23637 3332 21971 108663 4.60 + 2017 94 0.16777 0.15478 0.50 20306 3143 18734 86692 4.27 + 2017 95 0.18563 0.16987 0.50 17163 2916 15705 67958 3.96 + 2017 96 0.20541 0.18628 0.50 14247 2654 12921 52254 3.67 + 2017 97 0.22729 0.20409 0.50 11594 2367 10411 39334 3.39 + 2017 98 0.25150 0.22341 0.50 9228 2062 8197 28924 3.13 + 2017 99 0.27830 0.24430 0.50 7166 1751 6291 20727 2.89 + 2017 100 0.30795 0.26686 0.50 5416 1446 4693 14437 2.67 + 2017 101 0.34076 0.29115 0.50 3971 1156 3393 9744 2.45 + 2017 102 0.37707 0.31726 0.50 2815 893 2368 6352 2.26 + 2017 103 0.41725 0.34523 0.50 1922 664 1590 3985 2.07 + 2017 104 0.46172 0.37512 0.50 1259 472 1023 2395 1.90 + 2017 105 0.51092 0.40696 0.50 787 320 627 1373 1.75 + 2017 106 0.56537 0.44077 0.50 467 206 364 747 1.60 + 2017 107 0.62563 0.47656 0.50 261 125 199 383 1.47 + 2017 108 0.69231 0.51429 0.50 137 71 102 185 1.35 + 2017 109 0.76610 0.55392 0.50 67 37 48 83 1.25 + 2017 110+ 0.84775 1.00000 1.18 30 30 35 35 1.18 diff --git a/tests/Simple1.R b/tests/Simple1.R index a589dea..e093af5 100644 --- a/tests/Simple1.R +++ b/tests/Simple1.R @@ -9,9 +9,9 @@ library(eoR) # example and trials # read all information from the file fltper_1x1 -# example data source: Human Mortality Database https://www.mortality.org/ +# example data similar to data from Human Mortality Database https://www.mortality.org/ # period life tables 1x1 female -infile <- file.path(system.file(package="eoR"), "extdata", "DEUTNP.fltper_1x1.txt") +infile <- file.path(system.file(package="eoR"), "extdata", "DEUTNP.fltper_1x1m.txt") o1 <- readLT1x1(infile) @@ -31,7 +31,7 @@ region(o1) protocol(o1) # select some years -(o2 <- selectYears(o1, c(1999,2000))) +(o2 <- selectYears(o1, c(2011,2012))) # descriptive tables and a ranges lt1(o2)[, table(Year)] lt1(o2)[, table(Age)] @@ -46,9 +46,9 @@ showMethods("length") # read all information from the file Exposures_1x1 -# example data source: Human Mortality Database https://www.mortality.org/ +# example data similar to data from Human Mortality Database https://www.mortality.org/ # period life tables 1x1 female -infile2 <- file.path(system.file(package="eoR"), "extdata", "DEUTNP.Exposures_1x1.txt") +infile2 <- file.path(system.file(package="eoR"), "extdata", "DEUTNP.Exposures_1x1m.txt") e1 <- readEX1x1(infile2) @@ -68,7 +68,7 @@ region(e1) protocol(e1) # select some years -(e2 <- selectYears(e1, c(1999,2000))) +(e2 <- selectYears(e1, c(2011,2012))) # descriptive tables and a ranges ex1(e2)[, table(Year)] ex1(e2)[, table(Age)] @@ -81,10 +81,11 @@ showClass("EX1") showMethods("length") # read all information from 'GENESIS-Tabelle: 12613-02-02-4' +# example data similar to data from # Statistische Ämter des Bundes und der Länder, Deutschland, 2019 # Gestorbene nach Geschlecht, Nationalität und Altersgruppen - # Jahressumme - regionale Tiefe: Kreise und krfr. Städte -infile3 <- file.path(system.file(package="eoR"), "extdata", "12613-02-02-4.csv") +infile3 <- file.path(system.file(package="eoR"), "extdata", "12613-02-02-4m.csv") d1 <- readRegDeath(infile3) @@ -116,7 +117,7 @@ rd1(d2) rd1total(d2) # select a reagion -(d3 <- selectRegion(d2, "13003")) +(d3 <- selectRegion(d2, "03")) # descriptive tables and a ranges rd1(d3)[, table(Year)] rd1(d3)[, table(Age_Name)] @@ -133,9 +134,10 @@ showMethods("length") # read all information from 'GENESIS-Tabelle: 12411-03-03-4' +# example data similar to data from # Statistische Ämter des Bundes und der Länder, Deutschland, 2019 # Bevölkerung nach Geschlecht, Nationalität und Altersgruppen -infile4 <- file.path(system.file(package="eoR"), "extdata", "12411-03-03-4.csv") +infile4 <- file.path(system.file(package="eoR"), "extdata", "12411-03-03-4m.csv") r1 <- readRegExp(infile4) @@ -168,7 +170,7 @@ re1(r2) re1total(r2) # select a reagion -(r3 <- selectRegion(r2, "13003")) +(r3 <- selectRegion(r2, "03")) # descriptive tables and a ranges re1(r3)[, table(Year)] re1(r3)[, table(Age_Name)]