02_preprocess_data.bash

bash preprocessing/generateAnnotation.bash
#bash preprocessing/generateDhsInput.bash # not needed for final submission
bash preprocessing/generateDhsInputCounts.bash
bash preprocessing/generateFastaFile.bash
#bash preprocessing/generateLocus2GeneMap.bash # not needed for final submission

cd dnn
python 02a_preprocess_rna.py
python 02b_preprocess_dnase.py
python 02c_preprocess_dna.py
python 02d_preprocess_chip.py
python 02e_preprocess_within_chip.py
cd ..