Shiny_Fluxer

highlights

• loading preferences works again
• multiple bar plots all exported in one pdf

you need to update your tidyverse packages

New Shiny Flux tool for 13C tracers

Example files

In directory Input; an example for the old and the new input format

Input

Reads both old and new format

• Old format: reads only BIO and MEASUREMENT sheets
• New format: SAMPLE and MEASUREMENT sheets

SAMPLE (previously BIO)

• SAMPLE_ID (BIO_SAMPLE_ID)
• optional columns that will be created with default values if absent: a. INJECTION\_VOLUME b. RUN\_ORDER
• Any number of other columns. They will be used as design factors if a. They do not contain missing values b. They have at least two levels c. They do not only contain unique values

MEASUREMENT

Exactly three columns are parsed

• SAMPLE\_ID
• FEATURE\_ID
• PEAK\_AREA

FEATURE_ID

This replaces COMPOUND\_ID. The syntax will be described in detail elsewhere.

Processing

The IsoCorrectoR package is immediately called to correct for natural abundance 13C.

To do

• unify remove variables
• pls
• hclust

Clean up

• is server_init/0002_wipe...R still required?_