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<?xml version="1.0"?>
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<?xml-stylesheet type="text/css" href="http://deep.mpi-inf.mpg.de/DAC/files/style/deep_process_style.css"?>
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<!-- Header above: leave that unchanged -->
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<!-- Process documentation: change as necessary -->
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<!-- Process version: by convention, (single-digit) number, increment by one after update -->
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<!-- Process author: state full name and valid institutional e-mail address -->
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<author>
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<name>Author_Name</name>
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<email>Author_Email</email>
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</author>
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<!-- Process description: free-text field, describe what, how and why this analysis does.
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If you have to use special characters like ">" or "&", remember to escape them properly. -->
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<!-- Process input files: you can copy the "filetype" block as often as necessary -->
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<inputs>
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<filetype>
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<identifier>Input_ID1</identifier>
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<format>format</format>
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<quantity>single</quantity>
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<comment>Comment_1</comment>
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</filetype>
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</inputs>
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<!-- Process reference files: you can copy the "filetype" block as often as necessary -->
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<references>
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<filetype>
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<identifier>Reference_ID1</identifier>
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<format>format</format>
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<quantity>single</quantity>
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<comment>Comment_2</comment>
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</filetype>
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</references>
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<!-- Process output files: you can copy the "filetype" block as often as necessary; you only need to document
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output files that are stored, i.e., that are available in downstream analysis. Do not list intermediate or
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temporary files that are anyway discarded after a successful pipeline run -->
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<outputs>
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<filetype>
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<identifier>Output_ID1</identifier>
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<format>format</format>
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<quantity>collection</quantity>
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<comment>Comment_3</comment>
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</filetype>
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</outputs>
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<!-- Process step-by-step instructions: you can copy the "tool" block as often as necessary.
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Note that special characters as part of the command line must not be escaped. Enclosing the
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command line in a <![CDATA[ ]]> block avoids interpretation of its content as XML stream. -->
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<software>
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<tool>
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<name>Tool_Name</name>
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<version>Tool_Version</version>
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<!-- looping: can the above command line be executed in parallel, e.g., for each
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chromosome separately? If so, please specify the corresponding identifier
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from the command line here -->
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<loop>no_looping</loop>
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<comment>Comment_4</comment>
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</tool>
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</software>