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pebert committed Oct 20, 2016
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# Rope project settings
.ropeproject

# PyCharm folder
.idea/
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# comp-metadata
DEEP: specification of computational metadata and documentation of analysis pipelines (Process files)
# DEEP Computational Metadata

## Process documentation
In DEEP, standardized computational analysis pipelines are documented in form of so-called *Process* specifications.
A *Process* document lists required input and reference files, specifies the output generated by the pipeline and
provides a step-by-step description of the computational analysis.
*Processes* are in XML format and are rendered into a readable form when opened in a standard web browser
(assuming an active internet connection). They are lightweight enough to be send via e-mail to collaboration partners.

## Analysis documentation
Each run of a standardized pipeline produces an *Analysis* metadata document at the end. These are simple tab-separated
text files listing all input, output and reference files as well as non-default parameters in form of *key-value*
entries. Whereas a *Process* document has to be manually created and describes an analysis pipeline in generic form,
an *Analysis* metadata file is created automatically. Consequently, these files are not accessible via this repository.

## Reference
See the corresponding publication in Oxford Database for details:
["A general concept for consistent documentation of computational analyses", *Database* 2015](https://dx.doi.org/10.1093/database/bav050)

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