fixed stuff

functions/CellSortLoadTrials.m

@@ -46,5 +46,18 @@
 %do shift correction on complete video
 disp('Performing Shift Correction On All Frames..');
 [data_g_array, data_r_array] = CellSortShiftCorrection(data_g_array,data_r_array,reference, 'iter');
+
+%calculate quality plot
+reference = mean(data_r_array, 3);
+qualityPlot = zeros(1,size(data_r_array, 3));
+parfor i = 1:size(data_r_array,3)
+    qualityPlot(i) = squeeze(mean(mean(data_r_array(:,:,i) - reference,1),2));
+end
+qualityPlot = qualityPlot.^2;
+figure;
+plot(qualityPlot);
+for i=1:numberGreen
+    vline(numFrameList(i), 'black', greenFiles(i).name);
+end
 disp('Finished Loading Trial Files!');
 end

functions/CellSortLoadTrialsShiftCorrOnTrials.m

@@ -50,7 +50,6 @@
     data_g{i} = [];
 end
 
-disp('Finished Loading Trial Files!');
 %calculate quality plot
 reference = mean(data_r_array, 3);
 qualityPlot = zeros(1,size(data_r_array, 3));
@@ -63,4 +62,5 @@
 for i=1:numberGreen
     vline(numFrameList(i), 'black', greenFiles(i).name);
 end
+disp('Finished Loading Trial Files!');
 end

main.m

@@ -12,7 +12,9 @@
 %% load files
 %go to corr folder
 outFolder = 'F:\Arbeit\testData\PCAICA';
+%shifft correction on all frames
 %[data_g, data_r, frames, fn_green, fn_red, fileNamesGreen, fileNamesRed] = CellSortLoadTrials(outFolder);
+%shift correction only on trials
 [data_g, data_r, frames, fn_green, fn_red, fileNamesGreen, fileNamesRed] = CellSortLoadTrialsShiftCorrOnTrials(outFolder);
 %If you want to load single files, use the functions below.
 % fn_green = 'data_g.tif';