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finished plot
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MPIBR-vollrathf committed Oct 8, 2016
1 parent 3785948 commit a65da34
Showing 3 changed files with 150 additions and 360 deletions.
4 changes: 1 addition & 3 deletions functions/CellSortLoadTrials.m
Original file line number Diff line number Diff line change
@@ -18,7 +18,6 @@
data_r{i} = readTiff(redFiles(i).name);
data_g{i} = readTiff(greenFiles(i).name);
end
disp('Finished Loading Trial Files..');

%put them in single arrays
numFrames = 0;
@@ -38,15 +37,14 @@
data_g_array(:,:,(numFrameList(i)+1):numFrameList(i+1)) = data_g{i};
data_g{i} = [];
end
disp('Finished Creating Big Data Set');

%do shift correction again and assume that all trials thereself are already
%corrected, so do corretion on medianprojection of complete files!

%calculate medianprojection of first intervall
reference = median(data_r_array(:,:,numFrameList(1)+1:numFrameList(1+1)),3);
%do shift correction on complete video
disp('Performing Shift Correction On All Frames..');
[data_g_array, data_r_array] = CellSortShiftCorrection(data_g_array,data_r_array,reference, 'iter');
disp('Finished Performing Shift Correction On All Trials..');
disp('Finished Loading Trial Files!');
end
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