switched green and red channel in file import

MPIBR · Oct 14, 2016 · acfe336 · acfe336
1 parent 1e1bd1c
commit acfe336
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Showing 4 changed files with 487 additions and 316 deletions.
diff --git a/functions/CellSortXCorr.m b/functions/CellSortXCorr.m
@@ -30,8 +30,8 @@ function CellSortXCorr(inFolder, outFolder, nSubIm, binningFactor)
     %go into folder
     cd(inFolder);
     cd(folders(f).name);
-    greenFiles = dir('ChanB_*_*.tif');
-    redFiles = dir('ChanA_*_*.tif');
+    greenFiles = dir('ChanA_*_*.tif');
+    redFiles = dir('ChanB_*_*.tif');
     %check if fileNumber is the same
     if size(greenFiles, 1) ~= size(redFiles, 1)
         error(['Unequal number of files in trial folder "', folders(f).name, '"!!']);