some bug fixing in readTiff, Binning..

CellSortTemporalBinning.m

@@ -1,4 +1,7 @@
 function [data_g, data_r] = CellSortTemporalBinning(data_g, data_r, binningFactor)
-data_g = binning(data_g, bininngFactor, 'mean');
-data_r = binning(data_r, bininngFactor, 'mean');
+class_g = class(data_g);
+class_r = class(data_r);
+
+data_g = cast(binning(data_g, binningFactor, 'mean'), class_g);
+data_r = cast(binning(data_r, binningFactor, 'mean'), class_r);
 end

main.m

@@ -1,29 +1,22 @@
 %% load and prepare all single tiffs
 %importing
 [data_g,data_r] = CellSortLoadSingleFiles('ChanA*.tif', 'ChanB*.tif');
-%% shiftCorrection
+%shiftCorrection
 %generates shift corrected files for the green and red channels, needs
 %DIPlib (available for free)
-[data_g, data_r] = CellSortShiftCorrection(data_g,data_r);
+[data_g, data_r] = CellSortShiftCorrection(data_g, data_r);
 %temporal binning
 binningFactor = [1 1 2]; %x, y, t
 [data_g, data_r] = CellSortTemporalBinning(data_g, data_r, binningFactor);
 %% export
-fileName_g = 'green.tif';
-fileName_r = 'red.tif';
-CellSortExportTifStack(data_g, fileName_g);
-CellSortExportTifStack(data_r, fileName_r);
-%% merge files
-fn_green = 'merged_green.tiff';
-fn_red = 'merged_red.tiff';
-fileList = {'green_13.tiff', 'green_14.tiff','green_15.tiff','green_1.tiff','green_2.tiff','green_3.tiff'};
-CellSortMergeTiff(fileList, fn_green);
-fileList = {'red_13.tiff', 'red_14.tiff','red_15.tiff','red_1.tiff','red_2.tiff','red_3.tiff'};
-CellSortMergeTiff(fileList, fn_red);
+fn_green = 'green.tif';
+fn_red = 'red.tif';
+CellSortExportTifStack(data_g, fn_green);
+CellSortExportTifStack(data_r, fn_red);
 %% load files
-%if you haven't used the shiftCorrection you have to load the files extra
-fn_green = 'green_13_corr.tif';
-fn_red = 'red_13_corr.tif';
+%if you haven't used the shiftCorrection you have to load the already processed files
+fn_green = 'green.tif';
+fn_red = 'red.tif';
 data_g = readTiff(fn_green);
 data_r = readTiff(fn_red);
 %% 1. PCA

readTiff.m

@@ -1,9 +1,9 @@
 function data = readTiff(filename)
 info = imfinfo(filename);
 
-if info.BitDepth == 16 || info.BitDepth == 12
+if info(1).BitDepth == 16 || info(1).BitDepth == 12
     filetype = 'uint16';
-elseif info.BitDepth == 8
+elseif info(1).BitDepth == 8
     filetype = 'uint8';
 else
     filetype = 'uint16';