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Update DE_analysis_functions.R
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MPIBR-toschesm committed May 18, 2018
1 parent 5059372 commit 7ac40c2
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Expand Up @@ -9,7 +9,7 @@ library(data.table)
# id2 = identity 2
# min.pct = minimum percentage of cells expressing the gene
# thresh.use = minimum AVERAGE DIFFERENCE for filtering, in log scale (base e), e.g. for 1.5 fold change, type log(1.5)
# data.info.col = column number for columns in data.info that contain metadata (not clusters...), default is 1:13, for our lizard and turtle files
# data.info.col = column number for columns in data.info that contain metadata (not clusters...)

FindMarkers.MAST <- function(object, id1, id2, min.pct, thresh.use,data.info.col = 1:13){

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