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Commits on Jan 20, 2019

• adding R skripts and modification in find_exons.py and visualize.py

  anastasiia

  committedJan 20, 2019
  4056411

Commits on Dec 27, 2018

• adding two new columns gene_id and transcript_id to the output file

  anastasiia

  committedDec 27, 2018
  b10fba0

Commits on Dec 18, 2018

• fixing the bug. now all the genes will be converted to lowercase to exclude the problems with input files

  anastasiia

  committedDec 18, 2018
  51540f5

Commits on Dec 11, 2018

• visualisation works fine

  anastasiia

  committedDec 11, 2018
  94f32ca

• working with groups of genes the user is interested in

  anastasiia

  committedDec 11, 2018
  bf0d295

• forgot to add sys.exit in the check input files

  anastasiia

  committedDec 11, 2018
  9bc6edd

• input genes of interest as a text file only and no more as list

  anastasiia

  committedDec 11, 2018
  f4532e8

• final changes in comments and visual presentation

  anastasiia

  committedDec 11, 2018
  d236c95

• adding the tsl to the output file, as well as changing some imports and comments

  anastasiia

  committedDec 11, 2018
  1133d0f

Commits on Dec 10, 2018

• adding the mean_tsl to the output file

  anastasiia

  committedDec 10, 2018
  1c199b0

Commits on Dec 4, 2018

• using . after the gene name makes grep to look for occurences of words that starts with gene names, and not these containing gene names within

  anastasiia

  committedDec 4, 2018
  f8b5f5e

• deleting unused code and creating an environment for the find_exons

  anastasiia

  committedDec 4, 2018
  932097f

• backup before changing to multiprocessing and visualisation of two groups instead of each gene

  anastasiia

  committedDec 4, 2018
  eb62101

Commits on Nov 27, 2018

• changing the command of grep to call all genes at once with help of grep -e

  anastasiia

  committedNov 27, 2018
  6f21dc3

• making a boxplot for each gene using the scores of all transcripts

  anastasiia

  committedNov 27, 2018
  3cb2320

• write each transcript with the corresponding gene in the output file

  anastasiia

  committedNov 27, 2018
  9e940f8

• starting to work with genes reseived from the find_exons

  anastasiia

  committedNov 27, 2018
  750209a

• to not loose some of the genes while looking for transcripts we are saving the combination of gene and transcript name

  anastasiia

  committedNov 27, 2018
  ad02c52

Commits on Nov 26, 2018

• adding transcript name to the output file and do not chose the best transcript, just save everything

  anastasiia

  committedNov 26, 2018
  3549b97

• making the box plot look nice

  anastasiia

  committedNov 26, 2018
  50efe41

• adding a small script to visualize the results of the find_exons.py

  anastasiia

  committedNov 26, 2018
  405e31b

• changing the header of the output file

  anastasiia

  committedNov 26, 2018
  a0e3033

• excluding pseudogenes while searching and saving only the best gene to the output file

  anastasiia

  committedNov 26, 2018
  0b7318e

Commits on Nov 23, 2018

• changing the idea on how to check for the best gene

  anastasiia

  committedNov 23, 2018
  8a3ab2e

Commits on Nov 15, 2018

• the plotting is done

  anastasiia

  committedNov 15, 2018
  4a31126

• writing the output file

  anastasiia

  committedNov 15, 2018
  bd040a2

• finding the length of exons

  anastasiia

  committedNov 15, 2018
  e7f7d5d

• the extracting of information from the gtf files is done

  anastasiia

  committedNov 15, 2018
  01dd313

• using grep to find the genes we are interested in

  anastasiia

  committedNov 15, 2018
  92673e2

Commits on Nov 14, 2018

• looking for genes of interest in the genes gtf file

  anastasiia

  committedNov 14, 2018
  4e34a88

• check for the inputs

  anastasiia

  committedNov 14, 2018
  67a80fb

• small changes in comments, preparing for coding

  anastasiia

  committedNov 14, 2018
  3b62e45

• adding of a license

  anastasiia

  committedNov 14, 2018
  b73686c

• Starting script

  anastasiia

  authoredNov 14, 2018
  bc76b7a

• Initial commit

  anastasiia

  authoredNov 14, 2018
  8c5d090