Weighted motif enrichment analysis using digital genomic footprinting scores
To set up WiNNie for a run, please make sure you have installed CONDA.We are using a conda environment to install all needed dependencies.
- Clone the directory
git clone https://github.com/petrokvitka/WiNNie- Switch to the directory
cd WiNNie- Create the needed environment from the file tfbs.yaml
conda env create --file winnie.yaml- Activate the environment
source activate winnie- You are ready to use the WiNNie! To learn how to use TFBS scan, just type
python winnie.py -h