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WiNNie Getting started Installation
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WiNNie

Weighted motif enrichment analysis using digital genomic footprinting scores

Getting started

To set up WiNNie for a run, please make sure you have installed CONDA.We are using a conda environment to install all needed dependencies.

Installation

  1. Clone the directory
git clone https://github.com/petrokvitka/WiNNie
  1. Switch to the directory
cd WiNNie
  1. Create the needed environment from the file tfbs.yaml
conda env create --file winnie.yaml
  1. Activate the environment
source activate winnie
  1. You are ready to use the WiNNie! To learn how to use TFBS scan, just type
python winnie.py -h