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changed pval threshold range
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barel committed Mar 9, 2021
1 parent e484fda commit c3cbe09
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion evaluation/eval_cross_validation.py
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ def get_parser():
parser.add_argument('-e', '--edge_list', type=str, required=True, help='Edge list of the input network')
parser.add_argument('-s', '--seed_list', type=str, required=True, help="List of seed nodes for starting the propagation from")
parser.add_argument('-m', '--methods', type=str, nargs='+', required=False, default=["deg_norm","core_norm","deg_core_diff","deg_core_ratio"], help='Types of normalisation methods to be evaluated and compared')
parser.add_argument('-p', '--pval_thresh', type=list, required=False, default=np.linspace(0.01,1.0,100), help='Pvalues thresholds for the evaluation')
parser.add_argument('-p', '--pval_thresh', type=list, required=False, default=np.linspace(0.001,1.01,110), help='Pvalues thresholds for the evaluation')
parser.add_argument('-f', '--fold_num', type=int, required=True, help='Number of cross validation folds')
parser.add_argument('-d', '--cross_valid_dir', type=str, required=True, help='permutations directory that includes the edge lists for all network permutations')
return parser
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