mkdir_BIDS.m

function mkdir_BIDS(output_dir)
% 
% prepare BIDS directory structure
%  
% this function creates a subdirectory "BIDS" in the 
% current subject's folder
%
% file history:
% created M. Czisch & F. Binder 8.11.2017

cmd_str = ['mkdir ', output_dir];          system(cmd_str);
cmd_str = ['mkdir ', output_dir, '/anat']; system(cmd_str);
cmd_str = ['mkdir ', output_dir, '/func']; system(cmd_str);
cmd_str = ['mkdir ', output_dir, '/dwi'] ; system(cmd_str);

cmd_str = ['touch ', output_dir, '/anat/logfile_anat_dcm2nii.txt']; system(cmd_str);
cmd_str = ['touch ', output_dir, '/func/logfile_func_dcm2nii.txt']; system(cmd_str);
cmd_str = ['touch ', output_dir, '/dwi/logfile_dwi_dcm2nii.txt']; system(cmd_str);