Fix arguments of trim_galore

donald · Sep 13, 2022 · 8eb42b3 · 8eb42b3
1 parent 303e16d
commit 8eb42b3
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/Adapting_new_script_for_computing_cluster.sh b/Adapting_new_script_for_computing_cluster.sh
@@ -93,7 +93,7 @@ execute() {
 
 	: Trimming $id with trim_galore
 
-	prun python3 trim_galore --paired --nextera -j $THREADS fastq/$f1.fastq fastq/$f2.fastq >> $id.trimmingStats.txt 2>&1
+	prun python3 trim_galore --paired --nextera -j $THREADS fastq/$f1 fastq/$f2 > $id.trimmingStats.txt 2>&1
 
 	: Mapping $id with bowtie2