Add location of picard.jar

donald · Sep 13, 2022 · b7689d9 · b7689d9
1 parent 70df2e4
commit b7689d9
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/Adapting_new_script_for_computing_cluster.sh b/Adapting_new_script_for_computing_cluster.sh
@@ -1,6 +1,12 @@
 #!/bin/bash
 # Performs alignment and filtering of CUT&Tag data
 
+# FIXME:
+# picard.jar should be available from some
+# program directory.
+# Downloaded from https://github.com/broadinstitute/picard/releases/tag/2.27.4
+PICARD=/project/RNAseq_Mdl_data/Konrad/August/picard.jar
+
 # inputs
 
 fastq_dir=/project/RNAseq_Mdl_data/Konrad/August/fastq # Fastq directory