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Remove superfluous backslash
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donald committed Sep 13, 2022
1 parent 27fbfee commit d800970
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion Adapting_new_script_for_computing_cluster.sh
Original file line number Diff line number Diff line change
Expand Up @@ -136,7 +136,8 @@ execute() {
# note: this is single-threaded but takes long. Put this into separate cluster job?
prun python3 bamCoverage -b final_bam/${id}_sorted_blacklisted.bam -o bigwig/$id.bw -bs 10 -e \
--normalizeUsing CPM -ignore chrX chrY \
--numberOfProcessors $THREADS \
--numberOfProcessors $THREADS

prun python3 bamCoverage -b dedup/${id}_dedup.bam -o bigwig/${id}_dedup.bw -bs 10 -e \
--normalizeUsing CPM -ignore chrX chrY \
--numberOfProcessors $THREADS \
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