kmeans_links.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/kmeans_links.R
\name{kmeans_links}
\alias{kmeans_links}
\title{Function to apply kmeans clustering on the score of links}
\usage{
kmeans_links(score_matrix)
}
\arguments{
\item{score_matrix}{score matrix obtained from DPM or reg.DPM.}
}
\value{
a list containing
- the list of the links as a data frame. Each line of the data frame corresponds to a link.
The first and second columns are the corresponding nodes of the link and the third column is the score of the link.
- the threshold that all the links with scores more than it are considered as an edge.
}
\description{
Function to apply kmeans clustering on the score of links
}
\examples{
## Load DREAM4 data (insilico_size10_1_knockouts)
data(dream4)

## Run regularized DPM
res <- reg.dpm(data)

## Get the list of the links based on kmeans clustering
linklist <- kmeans_links(res)$LinkList

##Get the threshold at significance level alpha=0.05
kmeans_links(res)$threshold


}