Merge branch 'jc/cache-tree' into jc/dirwalk-n-cache-tree

* jc/cache-tree: (24 commits)
  Fix crash when reading the empty tree
  fsck-objects: do not segfault on missing tree in cache-tree
  cache-tree: a bit more debugging support.
  read-tree: invalidate cache-tree entry when a new index entry is added.
  Fix test-dump-cache-tree in one-tree disappeared case.
  fsck-objects: mark objects reachable from cache-tree
  cache-tree: replace a sscanf() by two strtol() calls
  cache-tree.c: typefix
  test-dump-cache-tree: validate the cached data as well.
  cache_tree_update: give an option to update cache-tree only.
  read-tree: teach 1-way merege and plain read to prime cache-tree.
  read-tree: teach 1 and 2 way merges about cache-tree.
  update-index: when --unresolve, smudge the relevant cache-tree entries.
  test-dump-cache-tree: report number of subtrees.
  cache-tree: sort the subtree entries.
  Teach fsck-objects about cache-tree.
  index: make the index file format extensible.
  cache-tree: protect against "git prune".
  Add test-dump-cache-tree
  Use cache-tree in update-index.
  ...

.gitignore

@@ -123,6 +123,7 @@ git-write-tree
 git-core-*/?*
 test-date
 test-delta
+test-dump-cache-tree
 common-cmds.h
 *.tar.gz
 *.dsc

Makefile

@@ -208,7 +208,7 @@ DIFF_OBJS = \
 	diffcore-delta.o log-tree.o
 
 LIB_OBJS = \
-	blob.o commit.o connect.o csum-file.o base85.o \
+	blob.o commit.o connect.o csum-file.o cache-tree.o base85.o \
 	date.o diff-delta.o entry.o exec_cmd.o ident.o index.o \
 	object.o pack-check.o patch-delta.o path.o pkt-line.o \
 	quote.o read-cache.o refs.o run-command.o \
@@ -609,6 +609,9 @@ test-date$X: test-date.c date.o ctype.o
 test-delta$X: test-delta.c diff-delta.o patch-delta.o
 	$(CC) $(ALL_CFLAGS) -o $@ $(ALL_LDFLAGS) $^
 
+test-dump-cache-tree$X: dump-cache-tree.o $(GITLIBS)
+	$(CC) $(ALL_CFLAGS) -o $@ $(ALL_LDFLAGS) $(filter %.o,$^) $(LIBS)
+
 check:
 	for i in *.c; do sparse $(ALL_CFLAGS) $(SPARSE_FLAGS) $$i || exit; done
 

apply.c

@@ -8,6 +8,7 @@
  */
 #include <fnmatch.h>
 #include "cache.h"
+#include "cache-tree.h"
 #include "quote.h"
 #include "blob.h"
 #include "delta.h"
@@ -1917,6 +1918,7 @@ static void remove_file(struct patch *patch)
 	if (write_index) {
 		if (remove_file_from_cache(patch->old_name) < 0)
 			die("unable to remove %s from index", patch->old_name);
+		cache_tree_invalidate_path(active_cache_tree, patch->old_name);
 	}
 	if (!cached)
 		unlink(patch->old_name);
@@ -2018,8 +2020,9 @@ static void create_file(struct patch *patch)
 
 	if (!mode)
 		mode = S_IFREG | 0644;
-	create_one_file(path, mode, buf, size);	
+	create_one_file(path, mode, buf, size);
 	add_index_file(path, mode, buf, size);
+	cache_tree_invalidate_path(active_cache_tree, path);
 }
 
 static void write_out_one_result(struct patch *patch)