Fixed bug/dependencies for Salmon container creation.

jenzopr · Jun 18, 2018 · 5850d05 · 5850d05
1 parent f08b04d
commit 5850d05
Show file tree

Hide file tree

Showing 2 changed files with 1 addition and 1 deletion.
diff --git a/environment.yml b/environment.yml
@@ -15,6 +15,7 @@ dependencies:
   - r-readr
   - r-dplyr
   - r-matrix
+  - r-rjson
   - bioconductor-tximport
   - bioconductor-singlecellexperiment
   - bioconductor-biomart
diff --git a/src/createSCE_salmon.R b/src/createSCE_salmon.R
@@ -2,7 +2,6 @@
 # Load libraries
 #
 library(tximport)
-library(DESeq2)
 library(biomaRt)
 library(SingleCellExperiment)