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Wrapped output in directory
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jenzopr committed Jul 26, 2018
1 parent ebea9e7 commit b67a62a
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/salmon.snake
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ rule salmon_index:
input:
REFERENCE_FASTA
output:
join(config['dirs']['ref'], 'salmon', basename(REFERENCE_FASTA).rstrip(".fa"))
directory(join(config['dirs']['ref'], 'salmon', basename(REFERENCE_FASTA).rstrip(".fa")))
threads: 30
params:
flags = config['salmon']['index_flags'] if 'index_flags' in config.get('salmon', {}) else ''
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