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Update output.rst
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afust authored Jan 9, 2019
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Expand Up @@ -10,7 +10,7 @@ File overview

- **finalhits.txt**: Filtered output table, it reports the best (closest) feature according to the config criteria for each peak. If multiple queries are given, it reports the best annotation taking multiple queries into account.

- **finalhits.bed**: Similar tp finalhits.txt in bed format. This means there is no header, the column order is as followed: peak_chr peak_start peak_end peak_id peak_strand peak_score feature feat_start feat_end feat_strand feat_anchor distance genomic_location + all attributes that are given in the config file
- **finalhits.bed**: Similar tp finalhits.txt in bed format. This means there is no header, the column order is as followed: peak_chr peak_start peak_end peak_id peak_strand peak_score feature feat_start feat_end feat_strand feat_anchor distance genomic_location **+ all attributes that are given in the config file**


- **besthits.txt**: This table is only produced if more than one query is given. It reports the best annotation per query for each peak.
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