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update uropa gui
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afust committed Jan 26, 2018
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Expand Up @@ -9,7 +9,7 @@ Features
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* **Input**: BED file of peaks or other genomic regions
* **Reference**: GTF file of desired target features (e.g. genes, transcripts, probes, repeats, ...); source = Gencode/Ensembl (102 organisms included) or custom upload
* **Reference**: GTF file of desired target features (e.g. genes, transcripts, probes, repeats, ...); source = Gencode/Ensembl (102 organisms included) or custom upload
* **Association rules**: VERY diverse and easily combinable to a complex ruleset (see :doc:`/config`)
* **Persistence**: Unique identifier is created on the server and results will remain available temporarily using the respective link
* **Hosted**: Either online on our web server or as a local R Shiny installation
Expand All @@ -25,13 +25,10 @@ Try UROPA GUI

The `UROPA_GUI`_ contains all necessary data to quickly sample the capabilities of UROPA GUI.
* **UROPA GUI user guide**: Stepwise tutorial.
* **Example data**: The following demo GTF and BED files are available on the server.

Homo_sapiens.hg19.GRCh37.75_genes_v2.gft -> `Human GTF` file with reference genes

ENCFF001VFA.pol2.sub.bed -> `POLR2A`_ ChIP-seq experiment (14989 peaks)

..note:: It is mandatory to select filter.attribute before attribute.value. Depending on the GTF file, it might take some time for attribute.value to be loaded. Please be patient!
* **Example data**: The following demo GTF and BED files are available on the server. Homo_sapiens.hg19.GRCh37.75_genes_v2.gft -> `Human GTF` file with reference genes ENCFF001VFA.pol2.sub.bed -> `POLR2A`_ ChIP-seq experiment (14989 peaks)

.. note:: It is mandatory to select ``filter.attribute`` before ``attribute.value``. Depending on the GTF file, it might take some time for the ``attribute.value`` to be loaded. Please be patient!

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