update

loosolab · Mar 3, 2020 · 2cab244 · 2cab244
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diff --git a/PYKS/Kubeassitent.egg-info/requires.txt b/PYKS/Kubeassitent.egg-info/requires.txt
@@ -1,3 +1,4 @@
+s3transfer
 passlib
 jmespath
 botocore

diff --git a/PYKS/dist/Kubeassitent-0.0.1-py3.7.egg b/PYKS/dist/Kubeassitent-0.0.1-py3.7.egg
diff --git a/PYKS/setup.py b/PYKS/setup.py
@@ -11,6 +11,7 @@
         'console_scripts': ['S3 = PYKS.S3:main', 'Kube = PYKS.Kube:main']
       },
       install_requires=[
+	's3transfer',
       'passlib',
       'jmespath',
       'botocore',

diff --git a/TOBIAS_MACSEK/TOBIAS_Pipeline_MACSEK/.nextflow.log b/TOBIAS_MACSEK/TOBIAS_Pipeline_MACSEK/.nextflow.log
diff --git a/...TOBIAS_Pipeline_MACSEK/.nextflow/cache/e5911cde-a72d-49a4-9509-1258a4619e4b/db/000003.log b/...TOBIAS_Pipeline_MACSEK/.nextflow/cache/e5911cde-a72d-49a4-9509-1258a4619e4b/db/000003.log
diff --git a/...EK/TOBIAS_Pipeline_MACSEK/.nextflow/cache/e5911cde-a72d-49a4-9509-1258a4619e4b/db/CURRENT b/...EK/TOBIAS_Pipeline_MACSEK/.nextflow/cache/e5911cde-a72d-49a4-9509-1258a4619e4b/db/CURRENT
diff --git a/...ACSEK/TOBIAS_Pipeline_MACSEK/.nextflow/cache/e5911cde-a72d-49a4-9509-1258a4619e4b/db/LOCK b/...ACSEK/TOBIAS_Pipeline_MACSEK/.nextflow/cache/e5911cde-a72d-49a4-9509-1258a4619e4b/db/LOCK
diff --git a/...S_Pipeline_MACSEK/.nextflow/cache/e5911cde-a72d-49a4-9509-1258a4619e4b/db/MANIFEST-000002 b/...S_Pipeline_MACSEK/.nextflow/cache/e5911cde-a72d-49a4-9509-1258a4619e4b/db/MANIFEST-000002
diff --git a/...S_Pipeline_MACSEK/.nextflow/cache/e5911cde-a72d-49a4-9509-1258a4619e4b/index.furious_ride b/...S_Pipeline_MACSEK/.nextflow/cache/e5911cde-a72d-49a4-9509-1258a4619e4b/index.furious_ride
diff --git a/TOBIAS_MACSEK/TOBIAS_Pipeline_MACSEK/.nextflow/history b/TOBIAS_MACSEK/TOBIAS_Pipeline_MACSEK/.nextflow/history
diff --git a/TOBIAS_MACSEK/TOBIAS_Pipeline_MACSEK/TOBIAS_example_kubernetes_MACSEK.config b/TOBIAS_MACSEK/TOBIAS_Pipeline_MACSEK/TOBIAS_example_kubernetes_MACSEK.config
@@ -34,5 +34,5 @@ plotting: ""
 filter_motifs :  #number of motif conditions which are ploted
 
 #Kubernetes
-kubernetes: true #when is set true plotting runs on Kubernetes
+kubernetes: false #when is set true plotting runs on Kubernetes
 url : '' #url of the plotiung serivces
diff --git a/TOBIAS_MACSEK/output/ATF7_MA0834.1/ATF7_MA0834.1_Bcell_aggregate.pdf b/TOBIAS_MACSEK/output/ATF7_MA0834.1/ATF7_MA0834.1_Bcell_aggregate.pdf
diff --git a/TOBIAS_MACSEK/output/ATF7_MA0834.1/ATF7_MA0834.1_Bcell_heatmap.pdf b/TOBIAS_MACSEK/output/ATF7_MA0834.1/ATF7_MA0834.1_Bcell_heatmap.pdf
diff --git a/TOBIAS_MACSEK/output/ATF7_MA0834.1/ATF7_MA0834.1_Tcell_aggregate.pdf b/TOBIAS_MACSEK/output/ATF7_MA0834.1/ATF7_MA0834.1_Tcell_aggregate.pdf
diff --git a/TOBIAS_MACSEK/output/ATF7_MA0834.1/ATF7_MA0834.1_Tcell_heatmap.pdf b/TOBIAS_MACSEK/output/ATF7_MA0834.1/ATF7_MA0834.1_Tcell_heatmap.pdf
diff --git a/TOBIAS_MACSEK/output/ATF7_MA0834.1/ATF7_MA0834.1_aggregate_comparison.pdf b/TOBIAS_MACSEK/output/ATF7_MA0834.1/ATF7_MA0834.1_aggregate_comparison.pdf
diff --git a/TOBIAS_MACSEK/output/ATF7_MA0834.1/ATF7_MA0834.1_heatmap_comparison.pdf b/TOBIAS_MACSEK/output/ATF7_MA0834.1/ATF7_MA0834.1_heatmap_comparison.pdf
diff --git a/TOBIAS_MACSEK/output/Ar_MA0007.3/Ar_MA0007.3_Bcell_aggregate.pdf b/TOBIAS_MACSEK/output/Ar_MA0007.3/Ar_MA0007.3_Bcell_aggregate.pdf
diff --git a/TOBIAS_MACSEK/output/Ar_MA0007.3/Ar_MA0007.3_Bcell_heatmap.pdf b/TOBIAS_MACSEK/output/Ar_MA0007.3/Ar_MA0007.3_Bcell_heatmap.pdf
diff --git a/TOBIAS_MACSEK/output/Ar_MA0007.3/Ar_MA0007.3_Tcell_aggregate.pdf b/TOBIAS_MACSEK/output/Ar_MA0007.3/Ar_MA0007.3_Tcell_aggregate.pdf
diff --git a/TOBIAS_MACSEK/output/Ar_MA0007.3/Ar_MA0007.3_Tcell_heatmap.pdf b/TOBIAS_MACSEK/output/Ar_MA0007.3/Ar_MA0007.3_Tcell_heatmap.pdf
diff --git a/TOBIAS_MACSEK/output/Ar_MA0007.3/Ar_MA0007.3_aggregate_comparison.pdf b/TOBIAS_MACSEK/output/Ar_MA0007.3/Ar_MA0007.3_aggregate_comparison.pdf
diff --git a/TOBIAS_MACSEK/output/Ar_MA0007.3/Ar_MA0007.3_heatmap_comparison.pdf b/TOBIAS_MACSEK/output/Ar_MA0007.3/Ar_MA0007.3_heatmap_comparison.pdf
diff --git a/TOBIAS_MACSEK/output/Arnt_MA0004.1/Arnt_MA0004.1_Bcell_aggregate.pdf b/TOBIAS_MACSEK/output/Arnt_MA0004.1/Arnt_MA0004.1_Bcell_aggregate.pdf
diff --git a/TOBIAS_MACSEK/output/Arnt_MA0004.1/Arnt_MA0004.1_Bcell_heatmap.pdf b/TOBIAS_MACSEK/output/Arnt_MA0004.1/Arnt_MA0004.1_Bcell_heatmap.pdf
diff --git a/TOBIAS_MACSEK/output/Arnt_MA0004.1/Arnt_MA0004.1_Tcell_aggregate.pdf b/TOBIAS_MACSEK/output/Arnt_MA0004.1/Arnt_MA0004.1_Tcell_aggregate.pdf
diff --git a/TOBIAS_MACSEK/output/Arnt_MA0004.1/Arnt_MA0004.1_Tcell_heatmap.pdf b/TOBIAS_MACSEK/output/Arnt_MA0004.1/Arnt_MA0004.1_Tcell_heatmap.pdf
diff --git a/TOBIAS_MACSEK/output/Arnt_MA0004.1/Arnt_MA0004.1_aggregate_comparison.pdf b/TOBIAS_MACSEK/output/Arnt_MA0004.1/Arnt_MA0004.1_aggregate_comparison.pdf
diff --git a/TOBIAS_MACSEK/output/Arnt_MA0004.1/Arnt_MA0004.1_heatmap_comparison.pdf b/TOBIAS_MACSEK/output/Arnt_MA0004.1/Arnt_MA0004.1_heatmap_comparison.pdf
diff --git a/TOBIAS_MACSEK/output/BACH2_MA1101.1/BACH2_MA1101.1_Bcell_aggregate.pdf b/TOBIAS_MACSEK/output/BACH2_MA1101.1/BACH2_MA1101.1_Bcell_aggregate.pdf
diff --git a/TOBIAS_MACSEK/output/BACH2_MA1101.1/BACH2_MA1101.1_Bcell_heatmap.pdf b/TOBIAS_MACSEK/output/BACH2_MA1101.1/BACH2_MA1101.1_Bcell_heatmap.pdf
diff --git a/TOBIAS_MACSEK/output/BACH2_MA1101.1/BACH2_MA1101.1_Tcell_aggregate.pdf b/TOBIAS_MACSEK/output/BACH2_MA1101.1/BACH2_MA1101.1_Tcell_aggregate.pdf
diff --git a/TOBIAS_MACSEK/output/BACH2_MA1101.1/BACH2_MA1101.1_Tcell_heatmap.pdf b/TOBIAS_MACSEK/output/BACH2_MA1101.1/BACH2_MA1101.1_Tcell_heatmap.pdf
diff --git a/TOBIAS_MACSEK/output/BACH2_MA1101.1/BACH2_MA1101.1_aggregate_comparison.pdf b/TOBIAS_MACSEK/output/BACH2_MA1101.1/BACH2_MA1101.1_aggregate_comparison.pdf
diff --git a/TOBIAS_MACSEK/output/BACH2_MA1101.1/BACH2_MA1101.1_heatmap_comparison.pdf b/TOBIAS_MACSEK/output/BACH2_MA1101.1/BACH2_MA1101.1_heatmap_comparison.pdf
diff --git a/TOBIAS_MACSEK/output/BATFJUN_MA0462.1/BATFJUN_MA0462.1_Bcell_aggregate.pdf b/TOBIAS_MACSEK/output/BATFJUN_MA0462.1/BATFJUN_MA0462.1_Bcell_aggregate.pdf
diff --git a/TOBIAS_MACSEK/output/BATFJUN_MA0462.1/BATFJUN_MA0462.1_Bcell_heatmap.pdf b/TOBIAS_MACSEK/output/BATFJUN_MA0462.1/BATFJUN_MA0462.1_Bcell_heatmap.pdf
diff --git a/TOBIAS_MACSEK/output/BATFJUN_MA0462.1/BATFJUN_MA0462.1_Tcell_aggregate.pdf b/TOBIAS_MACSEK/output/BATFJUN_MA0462.1/BATFJUN_MA0462.1_Tcell_aggregate.pdf
diff --git a/TOBIAS_MACSEK/output/BATFJUN_MA0462.1/BATFJUN_MA0462.1_Tcell_heatmap.pdf b/TOBIAS_MACSEK/output/BATFJUN_MA0462.1/BATFJUN_MA0462.1_Tcell_heatmap.pdf
diff --git a/TOBIAS_MACSEK/output/BATFJUN_MA0462.1/BATFJUN_MA0462.1_aggregate_comparison.pdf b/TOBIAS_MACSEK/output/BATFJUN_MA0462.1/BATFJUN_MA0462.1_aggregate_comparison.pdf
diff --git a/TOBIAS_MACSEK/output/BATFJUN_MA0462.1/BATFJUN_MA0462.1_heatmap_comparison.pdf b/TOBIAS_MACSEK/output/BATFJUN_MA0462.1/BATFJUN_MA0462.1_heatmap_comparison.pdf
diff --git a/TOBIAS_MACSEK/output/BHLHE40_MA0464.2/BHLHE40_MA0464.2_Bcell_aggregate.pdf b/TOBIAS_MACSEK/output/BHLHE40_MA0464.2/BHLHE40_MA0464.2_Bcell_aggregate.pdf
diff --git a/TOBIAS_MACSEK/output/BHLHE40_MA0464.2/BHLHE40_MA0464.2_Bcell_heatmap.pdf b/TOBIAS_MACSEK/output/BHLHE40_MA0464.2/BHLHE40_MA0464.2_Bcell_heatmap.pdf
diff --git a/TOBIAS_MACSEK/output/BHLHE40_MA0464.2/BHLHE40_MA0464.2_Tcell_aggregate.pdf b/TOBIAS_MACSEK/output/BHLHE40_MA0464.2/BHLHE40_MA0464.2_Tcell_aggregate.pdf
diff --git a/TOBIAS_MACSEK/output/BHLHE40_MA0464.2/BHLHE40_MA0464.2_Tcell_heatmap.pdf b/TOBIAS_MACSEK/output/BHLHE40_MA0464.2/BHLHE40_MA0464.2_Tcell_heatmap.pdf
diff --git a/TOBIAS_MACSEK/output/BHLHE40_MA0464.2/BHLHE40_MA0464.2_aggregate_comparison.pdf b/TOBIAS_MACSEK/output/BHLHE40_MA0464.2/BHLHE40_MA0464.2_aggregate_comparison.pdf
diff --git a/TOBIAS_MACSEK/output/BHLHE40_MA0464.2/BHLHE40_MA0464.2_heatmap_comparison.pdf b/TOBIAS_MACSEK/output/BHLHE40_MA0464.2/BHLHE40_MA0464.2_heatmap_comparison.pdf
diff --git a/TOBIAS_MACSEK/output/Bach1Mafk_MA0591.1/Bach1Mafk_MA0591.1_Bcell_aggregate.pdf b/TOBIAS_MACSEK/output/Bach1Mafk_MA0591.1/Bach1Mafk_MA0591.1_Bcell_aggregate.pdf
diff --git a/TOBIAS_MACSEK/output/Bach1Mafk_MA0591.1/Bach1Mafk_MA0591.1_Bcell_heatmap.pdf b/TOBIAS_MACSEK/output/Bach1Mafk_MA0591.1/Bach1Mafk_MA0591.1_Bcell_heatmap.pdf
diff --git a/TOBIAS_MACSEK/output/Bach1Mafk_MA0591.1/Bach1Mafk_MA0591.1_Tcell_aggregate.pdf b/TOBIAS_MACSEK/output/Bach1Mafk_MA0591.1/Bach1Mafk_MA0591.1_Tcell_aggregate.pdf
diff --git a/TOBIAS_MACSEK/output/Bach1Mafk_MA0591.1/Bach1Mafk_MA0591.1_Tcell_heatmap.pdf b/TOBIAS_MACSEK/output/Bach1Mafk_MA0591.1/Bach1Mafk_MA0591.1_Tcell_heatmap.pdf
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diff --git a/TOBIAS_MACSEK/output/CEBPB_MA0466.2/CEBPB_MA0466.2_Bcell_aggregate.pdf b/TOBIAS_MACSEK/output/CEBPB_MA0466.2/CEBPB_MA0466.2_Bcell_aggregate.pdf
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