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TOBIAS/CHANGES
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| ## 0.8.0 (2019-09-04) | |
| - Added CreateNetwork to tools | |
| - Smaller bugfixes | |
| ## 0.7.0 (2019-08-13) | |
| - Updated the way p-values are calculated in BINDetect. Included 100-fold subsampling of background to estimate confidence interval. | |
| ## 0.6.4 (2019-08-07) | |
| - Bug fix for error with regions very close to chromosome borders for ATACorrect and ScoreBigwig. | |
| ## 0.6.3 (2019-07-16) | |
| - Increased size of texts in BINDetect volcano plot and moved label into plot | |
| ## 0.6.2 (2019-06-19) | |
| - Added --skip-excel option to skip excel overview per factor in BINDetect (can slow the run considerably for large output) | |
| - Internal changes to BINDetect for better debug overview | |
| - Fixed normalization for plotAggregate | |
| ## 0.6.1 (2019-06-05) | |
| - Fixed motif cluster names to prefix C_ | |
| - Added --filter function to format_motifs to filter output motifs using names/ids | |
| ## 0.6.0 (2019-05-29) | |
| - Added option to flip axes in PlotAggregate via "--signal-on-x" | |
| - Changed all command-line arguments containing "_" to "-" (e.g. --regions_in to --regions-in) (but retaining both options internally) | |
| ## 0.5.3 (2019-05-28) | |
| - Improved error messaging from file writers in bindetect | |
| ## 0.5.2 (2019-05-16) | |
| - Bugfix for reading meme format files in MotifList().from_file() | |
| ## 0.5.1 (2019-05-15) | |
| - Internal changes to OneMotif and MotifList classes | |
| - Bindetect now takes directories/file(s) as input for --motifs | |
| ## 0.5.0 (2019-05-02) | |
| - Added sum/mean/none scoring to ScoreBigwig as well as the option to get --absolute of input signal | |
| ## 0.4.1 (2019-04-29) | |
| - Fixed weird "can't pickle SwigPyObject objects"-error in bindetect | |
| ## 0.4.0 (2019-04-29) | |
| - Added --add_region_columns to TFBScan | |
| - Renamed FootprintScores to ScoreBigwig | |
| - Added normalization of input score distributions in BINDetect | |
| - Added general warning for --cores > max number of processors when running multiprocessing | |
| - Updated PlotChanges to also plot mean_score and percent_bound as well as overview per motif cluster | |
| - Added MOODS-python as dependency through pip | |
| ## 0.3.1 (2019-04-10) | |
| - Split motif ids between name/motif_id/output_prefix |