swig pickle motifs error

loosolab · Apr 29, 2019 · 3c1bd97 · 3c1bd97
1 parent 04ea5f7
commit 3c1bd97
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Showing 3 changed files with 6 additions and 4 deletions.
diff --git a/CHANGES b/CHANGES
@@ -1,4 +1,7 @@
-## 0.4.0 (2019-04-26)
+## 0.4.1 (2019-04-29)
+- Fixed weird "can't pickle SwigPyObject objects"-error in bindetect
+
+## 0.4.0 (2019-04-29)
 - Added --add_region_columns to TFBScan
 - Renamed FootprintScores to ScoreBigwig
 - Added normalization of input score distributions in BINDetect

diff --git a/tobias/__init__.py b/tobias/__init__.py
@@ -1 +1 @@
-__version__ = "0.4.0"
+__version__ = "0.4.1"
diff --git a/tobias/footprinting/bindetect.py b/tobias/footprinting/bindetect.py
@@ -190,7 +190,6 @@ def run_bindetect(args):
 	figure_pdf.savefig(bbox_inches='tight')
 	plt.close()
 
-
 	################# Peaks / GC in peaks ################
 	#Read peak and peak_header
 	peaks = RegionList().from_bed(args.peaks)
@@ -632,7 +631,7 @@ def run_bindetect(args):
 			base = cond1 + "_" + cond2
 
 			#Make copy of motifs and fill in with metadata
-			comparison_motifs = copy.deepcopy(motif_list)
+			comparison_motifs = motif_list 	#copy.deepcopy(motif_list) - swig pickle error, just overwrite motif_list
 			for motif in comparison_motifs:
 				name = motif.prefix
 				motif.change = float(info_table.at[name, base + "_change"])