Moved test_data out of snakemake directory for more visibility -> pat…

…hs in snakemake_pipeline/TOBIAS.config are now ../
loosolab · Dec 12, 2018 · 6e3a768 · 6e3a768
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Showing 39 changed files with 2,084 additions and 7 deletions.
diff --git a/snakemake_pipeline/TOBIAS.config b/snakemake_pipeline/TOBIAS.config
diff --git a/snakemake_pipeline/test_data/blacklist.bed → test_data/blacklist.bed b/snakemake_pipeline/test_data/blacklist.bed → test_data/blacklist.bed
diff --git a/snakemake_pipeline/test_data/genes.gtf → test_data/genes.gtf b/snakemake_pipeline/test_data/genes.gtf → test_data/genes.gtf
diff --git a/snakemake_pipeline/test_data/genome.fa → test_data/genome.fa b/snakemake_pipeline/test_data/genome.fa → test_data/genome.fa
diff --git a/snakemake_pipeline/test_data/genome.fa.fai → test_data/genome.fa.fai b/snakemake_pipeline/test_data/genome.fa.fai → test_data/genome.fa.fai
diff --git a/...pipeline/test_data/motifs/MA0002.2.jaspar → test_data/motifs/MA0002.2.jaspar b/...pipeline/test_data/motifs/MA0002.2.jaspar → test_data/motifs/MA0002.2.jaspar
diff --git a/...pipeline/test_data/motifs/MA0003.3.jaspar → test_data/motifs/MA0003.3.jaspar b/...pipeline/test_data/motifs/MA0003.3.jaspar → test_data/motifs/MA0003.3.jaspar
diff --git a/...pipeline/test_data/motifs/MA0004.1.jaspar → test_data/motifs/MA0004.1.jaspar b/...pipeline/test_data/motifs/MA0004.1.jaspar → test_data/motifs/MA0004.1.jaspar
diff --git a/...pipeline/test_data/motifs/MA0006.1.jaspar → test_data/motifs/MA0006.1.jaspar b/...pipeline/test_data/motifs/MA0006.1.jaspar → test_data/motifs/MA0006.1.jaspar
diff --git a/...pipeline/test_data/motifs/MA0007.3.jaspar → test_data/motifs/MA0007.3.jaspar b/...pipeline/test_data/motifs/MA0007.3.jaspar → test_data/motifs/MA0007.3.jaspar
diff --git a/...pipeline/test_data/motifs/MA0009.2.jaspar → test_data/motifs/MA0009.2.jaspar b/...pipeline/test_data/motifs/MA0009.2.jaspar → test_data/motifs/MA0009.2.jaspar
diff --git a/...pipeline/test_data/motifs/MA0014.3.jaspar → test_data/motifs/MA0014.3.jaspar b/...pipeline/test_data/motifs/MA0014.3.jaspar → test_data/motifs/MA0014.3.jaspar
diff --git a/...pipeline/test_data/motifs/MA0017.2.jaspar → test_data/motifs/MA0017.2.jaspar b/...pipeline/test_data/motifs/MA0017.2.jaspar → test_data/motifs/MA0017.2.jaspar
diff --git a/...pipeline/test_data/motifs/MA0018.3.jaspar → test_data/motifs/MA0018.3.jaspar b/...pipeline/test_data/motifs/MA0018.3.jaspar → test_data/motifs/MA0018.3.jaspar
diff --git a/...pipeline/test_data/motifs/MA0019.1.jaspar → test_data/motifs/MA0019.1.jaspar b/...pipeline/test_data/motifs/MA0019.1.jaspar → test_data/motifs/MA0019.1.jaspar
diff --git a/...pipeline/test_data/motifs/MA0024.3.jaspar → test_data/motifs/MA0024.3.jaspar b/...pipeline/test_data/motifs/MA0024.3.jaspar → test_data/motifs/MA0024.3.jaspar
diff --git a/...pipeline/test_data/motifs/MA0025.1.jaspar → test_data/motifs/MA0025.1.jaspar b/...pipeline/test_data/motifs/MA0025.1.jaspar → test_data/motifs/MA0025.1.jaspar
diff --git a/...pipeline/test_data/motifs/MA0027.2.jaspar → test_data/motifs/MA0027.2.jaspar b/...pipeline/test_data/motifs/MA0027.2.jaspar → test_data/motifs/MA0027.2.jaspar
diff --git a/...pipeline/test_data/motifs/MA0028.2.jaspar → test_data/motifs/MA0028.2.jaspar b/...pipeline/test_data/motifs/MA0028.2.jaspar → test_data/motifs/MA0028.2.jaspar
diff --git a/...pipeline/test_data/motifs/MA0029.1.jaspar → test_data/motifs/MA0029.1.jaspar b/...pipeline/test_data/motifs/MA0029.1.jaspar → test_data/motifs/MA0029.1.jaspar
diff --git a/...pipeline/test_data/motifs/MA0030.1.jaspar → test_data/motifs/MA0030.1.jaspar b/...pipeline/test_data/motifs/MA0030.1.jaspar → test_data/motifs/MA0030.1.jaspar
diff --git a/...pipeline/test_data/motifs/MA0031.1.jaspar → test_data/motifs/MA0031.1.jaspar b/...pipeline/test_data/motifs/MA0031.1.jaspar → test_data/motifs/MA0031.1.jaspar
diff --git a/...pipeline/test_data/motifs/MA0032.2.jaspar → test_data/motifs/MA0032.2.jaspar b/...pipeline/test_data/motifs/MA0032.2.jaspar → test_data/motifs/MA0032.2.jaspar
diff --git a/...pipeline/test_data/motifs/MA0033.2.jaspar → test_data/motifs/MA0033.2.jaspar b/...pipeline/test_data/motifs/MA0033.2.jaspar → test_data/motifs/MA0033.2.jaspar
diff --git a/...pipeline/test_data/motifs/MA0035.3.jaspar → test_data/motifs/MA0035.3.jaspar b/...pipeline/test_data/motifs/MA0035.3.jaspar → test_data/motifs/MA0035.3.jaspar
diff --git a/...pipeline/test_data/motifs/MA0036.3.jaspar → test_data/motifs/MA0036.3.jaspar b/...pipeline/test_data/motifs/MA0036.3.jaspar → test_data/motifs/MA0036.3.jaspar
diff --git a/...pipeline/test_data/motifs/MA0037.3.jaspar → test_data/motifs/MA0037.3.jaspar b/...pipeline/test_data/motifs/MA0037.3.jaspar → test_data/motifs/MA0037.3.jaspar
diff --git a/...pipeline/test_data/motifs/MA0038.1.jaspar → test_data/motifs/MA0038.1.jaspar b/...pipeline/test_data/motifs/MA0038.1.jaspar → test_data/motifs/MA0038.1.jaspar
diff --git a/...pipeline/test_data/motifs/MA0039.3.jaspar → test_data/motifs/MA0039.3.jaspar b/...pipeline/test_data/motifs/MA0039.3.jaspar → test_data/motifs/MA0039.3.jaspar
diff --git a/...pipeline/test_data/motifs/MA0040.1.jaspar → test_data/motifs/MA0040.1.jaspar b/...pipeline/test_data/motifs/MA0040.1.jaspar → test_data/motifs/MA0040.1.jaspar
diff --git a/...pipeline/test_data/motifs/MA0041.1.jaspar → test_data/motifs/MA0041.1.jaspar b/...pipeline/test_data/motifs/MA0041.1.jaspar → test_data/motifs/MA0041.1.jaspar
diff --git a/...pipeline/test_data/motifs/MA0042.2.jaspar → test_data/motifs/MA0042.2.jaspar b/...pipeline/test_data/motifs/MA0042.2.jaspar → test_data/motifs/MA0042.2.jaspar
diff --git a/...pipeline/test_data/motifs/MA0043.2.jaspar → test_data/motifs/MA0043.2.jaspar b/...pipeline/test_data/motifs/MA0043.2.jaspar → test_data/motifs/MA0043.2.jaspar
diff --git a/...pipeline/test_data/motifs/MA0046.2.jaspar → test_data/motifs/MA0046.2.jaspar b/...pipeline/test_data/motifs/MA0046.2.jaspar → test_data/motifs/MA0046.2.jaspar
diff --git a/...pipeline/test_data/motifs/MA0047.2.jaspar → test_data/motifs/MA0047.2.jaspar b/...pipeline/test_data/motifs/MA0047.2.jaspar → test_data/motifs/MA0047.2.jaspar
diff --git a/...pipeline/test_data/motifs/MA0048.2.jaspar → test_data/motifs/MA0048.2.jaspar b/...pipeline/test_data/motifs/MA0048.2.jaspar → test_data/motifs/MA0048.2.jaspar
diff --git a/...pipeline/test_data/motifs/MA0050.2.jaspar → test_data/motifs/MA0050.2.jaspar b/...pipeline/test_data/motifs/MA0050.2.jaspar → test_data/motifs/MA0050.2.jaspar
diff --git a/...pipeline/test_data/motifs/MA0139.1.jaspar → test_data/motifs/MA0139.1.jaspar b/...pipeline/test_data/motifs/MA0139.1.jaspar → test_data/motifs/MA0139.1.jaspar
diff --git a/test_data/peaks.bed b/test_data/peaks.bed