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Merge branch 'master' of https://github.molgen.mpg.de/loosolab/TOBIAS
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@msbentsen
msbentsen committed Feb 12, 2019
2 parents 413196e + 57bd5ee commit 9ee2f62
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Expand Up @@ -89,7 +89,7 @@ $ TOBIAS PlotAggregate --TFBS test_data/BATFJUN_Bcell_bound.bed test_data/BATFJU

Visualize the split of bound/unbound sites for one condition:
```
$ TOBIAS PlotAggregate --TFBS test_data/IRF1_all.bed test_data/IRF1_bound.bed test_data/IRF1_unbound.bed --signals test_data/Bcell_uncorrected.bw test_data/Bcell_expected.bw test_data/Bcell_corrected.bw --output IRF1_footprint.pdf --share_y rows --plot_boundaries
$ TOBIAS PlotAggregate --TFBS test_data/IRF1_all.bed test_data/IRF1_bound.bed test_data/IRF1_unbound.bed --signals test_data/Bcell_uncorrected.bw test_data/Bcell_expected.bw test_data/Bcell_corrected.bw --output IRF1_footprint.pdf --share_y sites --plot_boundaries
```

**PlotHeatmap: Plot heatmaps and aggregates of ATAC-seq signals in combinations of .bed/.bw to visualize footprints**
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