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Edits on output.rst with new Output filenames #11

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Edits on output.rst with new Output filenames #11

wants to merge 27 commits into from

Commits on Jan 29, 2017

  1. htslib and python-Anaconda instruct. analytically

    @mkondili
    mkondili authored Jan 29, 2017
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  2. Added logger to parse_parameters call

    @mkondili
    mkondili authored Jan 29, 2017
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  3. logpath=cwd when no dir given

    @mkondili
    mkondili authored Jan 29, 2017
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  4. if name =main() :in end of script to call def "main"

    @mkondili
    mkondili authored Jan 29, 2017
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  5. Tabix*f*ile(not F) & anno.fetch without "multiple_iterators"

    @mkondili
    mkondili authored Jan 29, 2017
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  6. remove log.debug msgs,shrink comments.

    @mkondili
    mkondili authored Jan 29, 2017
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  7. not mention bigwig as optional key-not available

    @mkondili
    mkondili authored Jan 29, 2017
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  8. Add '-p gff' in run_tabix bash command 

    was giving error : "-p not given" and file format unknown
    @mkondili
    mkondili authored Jan 29, 2017
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  9. fix typo error

    @mkondili
    mkondili authored Jan 29, 2017
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  10. added my small fixes post-Review

    @mkondili
    mkondili authored Jan 29, 2017
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Commits on Jan 30, 2017

  1. correct Anaconda version to 4.2.0

    @mkondili
    mkondili authored Jan 30, 2017
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  2. add sudo to make install @htslib

    @mkondili
    mkondili authored Jan 30, 2017
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Commits on Feb 1, 2017

  1. change output filenames-depnd on config name

    @mkondili
    mkondili authored Feb 1, 2017
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  2. reformatted -> compact.txt

    @mkondili
    mkondili authored Feb 1, 2017
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Commits on Feb 7, 2017

  1. take in annikas changes(3/02)

    @mkondili
    mkondili authored Feb 7, 2017
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  2. add "why summary empty"

    @mkondili
    mkondili authored Feb 7, 2017
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  3. update accrd to output names

    @mkondili
    mkondili authored Feb 7, 2017
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  4. update with conda-pysam/no htslib anymore

    @mkondili
    mkondili authored Feb 7, 2017
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  5. load R

    @mkondili
    mkondili authored Feb 7, 2017
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  6. indent fix

    @mkondili
    mkondili authored Feb 7, 2017
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  7. how to call uropa.py by "alias"

    @mkondili
    mkondili authored Feb 7, 2017
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  8. write in bashrc

    @mkondili
    mkondili authored Feb 7, 2017
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  9. remove code-quotes

    @mkondili
    mkondili authored Feb 7, 2017
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  10. change indents

    @mkondili
    mkondili authored Feb 7, 2017
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  11. change indents of R packages

    @mkondili
    mkondili authored Feb 7, 2017
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  12. change indents-3

    @mkondili
    mkondili authored Feb 7, 2017
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  13. add lines to make dotted list in Python section

    @mkondili
    mkondili authored Feb 7, 2017
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