install.md

We recommend to install prerequisites using the conda package manager. Make sure to have `conda` installed, e.g. via

- [Miniconda](https://conda.io/miniconda.html)
	- download the Miniconda installer for **Python 3**
	- run ```bash Miniconda3-latest-Linux-x86_64.sh``` to install Miniconda
	- Answer the question "Do you wish the installer to prepend the Miniconda install location to PATH in your /home/.../.bashrc ?" with yes
		OR do ```PATH=dir/to/miniconda3:$PATH``` after installation process

Clone the ADMIRE repository and populate an environment with all prerequisites:

```bash
$ git clone https://github.molgen.mpg.de/loosolab/admire
$ conda env create -f admire/environment.yaml
$ export PATH=$PATH:dir/to/admire/src
```

Every time you intent to use ADMIRE, make sure the environment is activated:
```
$ source activate admire
$ admire -h
```