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admire/docs/regions.md
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Custom genomic regions should be provided in BED format and can be given by `admire -r regions1.bed -r regions2.bed ...`. | |
*Hint*: Use multiple `-r` parameters to analyse more than one region at a time. | |
*Hint*: The BED format is described [here](http://www.ensembl.org/info/website/upload/bed.html). | |
To enable the Gene Set Enrichment Analysis for a certain bed file, include a *gene_name* property in column 4 of the bed file: | |
``` | |
chr1 213941196 213942363 gene_name=gene1 | |
chr1 213942363 213943530 gene_name=gene2 | |
chr1 213943530 213944697 gene_name=gene3 | |
``` |